Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45550 434 / 4e-148 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45580 426 / 6e-145 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT2G45570 420 / 9e-143 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G61040 417 / 1e-141 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT1G33720 412 / 8e-140 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45560 409 / 1e-138 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT1G33730 340 / 1e-113 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT5G07990 318 / 2e-103 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G52970 314 / 1e-101 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT4G12300 314 / 2e-101 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028852 [exp] 746 / 0 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008936 [exp] 744 / 0 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008917 [exp] 676 / 0 AT2G45550 479 / 8e-166 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028898 [exp] 672 / 0 AT2G45550 488 / 1e-169 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028897 [exp] 654 / 0 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008918 [exp] 629 / 0 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028896 [exp] 627 / 0 AT2G45550 464 / 3e-160 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10036079 [exp] 593 / 0 AT2G45550 481 / 5e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008938 [exp] 592 / 0 AT2G45550 457 / 2e-157 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113900 [exp] 565 / 0 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 543 / 0 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 441 / 3e-151 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 429 / 8e-147 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 427 / 7e-146 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 426 / 2e-145 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 426 / 3e-145 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.006G094700 [exp] 342 / 2e-112 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.015G138900 [exp] 336 / 3e-110 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.007G084200 [exp] 336 / 3e-110 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10008935 pacid=23175135 polypeptide=Lus10008935 locus=Lus10008935.g ID=Lus10008935.BGIv1.0 annot-version=v1.0 ATGGAGTTGATGCTAATCACCACCTGCTTCCTCTGCCTCTTCACAACCTTAGCCATCCTCCTCCTCCGTTTCCTCTCTGACAAAACTCCGTCCAGACTTC CGCCGGGCCCTTCCCGCCTTCCGATCATCGGCAACCTCCACAACCTGGGCGGAAAACCCCACCAATCGCTGGCCCAACTTGCCAAGACTCACGGTCCCTT GATGAGCCTGAAGCTTGGCCAAGTCACCACTGTCGTCGCTTCCTCTCCAGCAATAGCGAAAGAAATTCTCCAAAAGCACGACCAAGTCCTTTGTAACCGT CAACTTATCCAGGCCTTTTGCGCCTGCAACCATCAGGAATTTGCTGTGACGCTTCTTCCCTTGGGATCCAAGTGGAGGAACCTTAGGAAAGTGTGCAACA CGCATCTATTCACCGCACAGAAGCTGGATTCCAACGGGGAACTTCGAAAGAGGACGATTCATGAGCTTATTGAAGATGTTCGACAAAATACTTATGAGGG GAAGGCGGTGGATATTGGTAGAGCGGCTTTCAGGGCGAGTTTTAGCGCTATGTCGATGATGGTTTTTTCGCTGGATTTGACGGATGAGGGTTCGGAGGAT GTGATGGAGTTCAAAATGGTTACTAGGGGTATAATGGATGAATCTGGGAAGCCTAACCTCGGAGACTATTTCCCGTTTCTTGCCCCTCTTGATTTGCAGG GGATACGGAGGCGTTCGTGGAATCTTTACGAGAAGGTGTTGAATCTATTTGGAAGGGTAATTGAGCAACGGTTGAAGAATCGGAAGTCGGAGGGTTATGT AACTGGTAATGACATGTTAGATACTCTTCTTGACATTAATGAAGAGAATGCCGAGGCTTCTATTGATACCGATGTCATCAAACACTTGTTCTTGGATTTA TTCGTTGCTGGGACTGATACAACTTCAAGCACATTAGAATGGGCCATGGCCGAACTACTACGAAGTCCTGACAAATTATATAAAGTTAGGGACGAACTAC ACCAAACTATTGGAAAGGAGAATCATCTTCAAGAATCTGACATCTCAAGGTTACCGTATTTACAAGCAATAATCAAAGAGACATTCAGGTTGCATCCGGC CCTTCCTTTGTTGGTTCCTAGAAATGCAGGATCCGATGTGGATATTGGCGGATTCATAGTGCCAAAAGGAGCAATGATTCTAATAAATGTATGGGCTATG GGTAGAGATCCAACTATATGGGACAATCCAAGCTCTTTCATGCCGGAGAGATTCATGGGATCAAACATTGATGTTCGAGGGAACAGTTTTGAACTGATAC CGTTTGGAGGCGGAAGAAGGATTTGTCTTGGATTGCCGTTGGCAATGAGGATGTTGCATATGGAGTTGGGTTCGCTAATTCATTGGTTTGACTGGAAACT CGAAGATGGAGTTGATCCAATCAGTCTGGATATGGAAGAGAAGTTTGGACTCACTTTACACAAGGCCAGGCCTTTGCTTGCTGTTCCGACACTCATATAA
AA sequence Show only first row Show all	>Lus10008935 pacid=23175135 polypeptide=Lus10008935 locus=Lus10008935.g ID=Lus10008935.BGIv1.0 annot-version=v1.0 MELMLITTCFLCLFTTLAILLLRFLSDKTPSRLPPGPSRLPIIGNLHNLGGKPHQSLAQLAKTHGPLMSLKLGQVTTVVASSPAIAKEILQKHDQVLCNR QLIQAFCACNHQEFAVTLLPLGSKWRNLRKVCNTHLFTAQKLDSNGELRKRTIHELIEDVRQNTYEGKAVDIGRAAFRASFSAMSMMVFSLDLTDEGSED VMEFKMVTRGIMDESGKPNLGDYFPFLAPLDLQGIRRRSWNLYEKVLNLFGRVIEQRLKNRKSEGYVTGNDMLDTLLDINEENAEASIDTDVIKHLFLDL FVAGTDTTSSTLEWAMAELLRSPDKLYKVRDELHQTIGKENHLQESDISRLPYLQAIIKETFRLHPALPLLVPRNAGSDVDIGGFIVPKGAMILINVWAM GRDPTIWDNPSSFMPERFMGSNIDVRGNSFELIPFGGGRRICLGLPLAMRMLHMELGSLIHWFDWKLEDGVDPISLDMEEKFGLTLHKARPLLAVPTLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008935 [exp]	0	1
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	2.4	0.9858
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	3.5	0.9857
AT5G60330			unknown protein		Lus10018274 [exp]	4.9	0.9849
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10016273 [exp]	5.2	0.9611
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	6.7	0.9783
AT1G08350			Endomembrane protein 70 protei...		Lus10020613 [exp]	6.8	0.9464
AT5G20885			RING/U-box superfamily protein...		Lus10008235 [exp]	8.5	0.9276
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022506 [exp]	9.0	0.9677
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	9.5	0.9741
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10016284 [exp]	10.4	0.9825

Compare expression of checked genes

Lus10008935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.