Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45550 494 / 5e-172 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G33720 483 / 3e-167 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45560 465 / 2e-160 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45570 456 / 6e-157 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45580 454 / 7e-156 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT3G61040 452 / 9e-156 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT1G33730 373 / 2e-126 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT5G07990 350 / 1e-115 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G52970 350 / 1e-115 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT4G12320 350 / 3e-115 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028852 [exp] 822 / 0 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008935 [exp] 818 / 0 AT2G45550 476 / 5e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028898 [exp] 745 / 0 AT2G45550 488 / 1e-169 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008917 [exp] 732 / 0 AT2G45550 479 / 8e-166 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028897 [exp] 724 / 0 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008918 [exp] 701 / 0 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028896 [exp] 691 / 0 AT2G45550 464 / 3e-160 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10036079 [exp] 688 / 0 AT2G45550 481 / 5e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028881 [exp] 659 / 0 AT2G45550 477 / 4e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113900 [exp] 625 / 0 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 612 / 0 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 486 / 7e-169 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 475 / 1e-164 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 473 / 6e-164 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 471 / 4e-163 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 468 / 7e-162 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.006G094700 [exp] 406 / 2e-137 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.012G137200 [exp] 375 / 4e-125 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.015G138900 [exp] 373 / 1e-124 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10008936 pacid=23175136 polypeptide=Lus10008936 locus=Lus10008936.g ID=Lus10008936.BGIv1.0 annot-version=v1.0 ATGGATCTGTTGCTAATCATCAGCTGCTTGCTCTGCCTCCTCCTAACTGTGGCCATCCTCTTCCGTTCCCTCTCTGAAAAAACTCCGTCCAAACTTCCAC CGGGTCCTTCCCGCCTTCCGATCATAGGCAACCTCCATAACCTGGGCGATAAACCTCACCAATCCCTCACCCAACTTGCCAAGGTTTACGGTCCCTTAAT GAGCCTCAAGCTCGGCCAAGTCACTACTATTGTCGTTTCCTCTCCGGCGGTAGCCAAGGAAATTCTCCAAAAGCACGACCAAGTCCTCTCCAACCGGCAT CTTATCCAGACCTTCCGCTCCTGCGACCACCACGAATTCGGAGTGGCTGTTCTCCCCATGGGATCCAAGTGGAGGAACCTAAGGAAAGTCTGCAACACGC ATCTGTTCACCGCTCAGAAGCTGGATTCCAACGGGGAGCTTCGGGGGAAGACCATTCGGGAGCTTCTTGAAAGCGTTCGACGAAATGCCTCTGAGGGGAA GGCGGTGGATATTGGTAGAGCGGCTTTCAAGACGATTTTTAGCGCTATGTCGATGATGGTTTTGTCGTTGGATTTGACCGACGAGGGTTCAGTGGTTGCA TCGGAGTTCAAAGACGTTACCAGAAGTATAATGGATGAAGCTGGGAAGCCTAACTTGGGAGACTATTTTCCGTTTCTTGCTGTTATGGATTTGCAGGGGA TACAAAAGCGGGCGAGGAGTCATTACGGGAAGGTGTTGAATCTGTTTGGAAGGGTCATCGAAGAACGATTGAAGAATCGAAAGTTGGAGGGTTATGTAAC GGGTAACGACATGCTCGATACTCTTCTCGACATTAATGAAGAGAATGACGAGGCTTCCATGGATTCAGATGTCATCAAACACTTGTTCTTGGATTTATTC GTGGCCGGAACTGATACAACATCAAGCACGTTAGAATGGGCAATGGTCGAGCTATTACGTAGTCCCGAAAAATTCGCTAAAGCCAGAGATGAATTAGACC AAATTGTTGGAAAAGGGAATCATCTTCAGGAATCTGACATCTCGCGGTTACCTTATCTACAAGCTATAGTCAAAGAGACTTTTAGGTTGCATCCAGCCCT TCCTTTCTTGGTTCCTAGGACCGCTGGGGCCGATACGGACATTTGCGGATTCGTGGTGCCAAAAGGAGCACAAATTCTGATCAATGTGTGGGCTATGGGT AGAGATCCGACTATATGGGACACTCCAAGCTCGTTCATACCTGAGAGATTCATGGGATCAGAAATTGATGTTCGAGGGAACAATTTTGAACTAACACCAT TTGGAGGTGGAAGAAGGATTTGTCTTGGATTGCCGTTGGCAATGAGGATGTTGCACATGGTGTTGGGTTCACTAGTTCATTGGTTTGACTGGAAACTCGA AAATGGAGTTGATCCAACCAATCTGGATATGGAAGAGAAGTTTGGACTCACTTTACAAAAGACCAAACCTTTACTCGCTGTTCCGAAGCGAGCAGTGGGA ATGACCGAATGA
AA sequence Show only first row Show all	>Lus10008936 pacid=23175136 polypeptide=Lus10008936 locus=Lus10008936.g ID=Lus10008936.BGIv1.0 annot-version=v1.0 MDLLLIISCLLCLLLTVAILFRSLSEKTPSKLPPGPSRLPIIGNLHNLGDKPHQSLTQLAKVYGPLMSLKLGQVTTIVVSSPAVAKEILQKHDQVLSNRH LIQTFRSCDHHEFGVAVLPMGSKWRNLRKVCNTHLFTAQKLDSNGELRGKTIRELLESVRRNASEGKAVDIGRAAFKTIFSAMSMMVLSLDLTDEGSVVA SEFKDVTRSIMDEAGKPNLGDYFPFLAVMDLQGIQKRARSHYGKVLNLFGRVIEERLKNRKLEGYVTGNDMLDTLLDINEENDEASMDSDVIKHLFLDLF VAGTDTTSSTLEWAMVELLRSPEKFAKARDELDQIVGKGNHLQESDISRLPYLQAIVKETFRLHPALPFLVPRTAGADTDICGFVVPKGAQILINVWAMG RDPTIWDTPSSFIPERFMGSEIDVRGNNFELTPFGGGRRICLGLPLAMRMLHMVLGSLVHWFDWKLENGVDPTNLDMEEKFGLTLQKTKPLLAVPKRAVG MTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008936 [exp]	0	1
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Lus10027553 [exp]	2.4	0.8910
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10007119 [exp]	3.6	0.8301
AT3G10720			Plant invertase/pectin methyle...		Lus10008937 [exp]	4.7	0.8888
AT1G12040		LRX1	leucine-rich repeat/extensin 1...		Lus10040566 [exp]	5.2	0.8526
					Lus10037463 [exp]	7.4	0.8672
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10000502 [exp]	7.5	0.8743
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Lus10039312 [exp]	8.1	0.8638
AT5G04970			Plant invertase/pectin methyle...		Lus10028882 [exp]	8.9	0.8572
AT1G75620			glyoxal oxidase-related protei...		Lus10024312 [exp]	9.8	0.8734
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	12.1	0.8615

Compare expression of checked genes

Lus10008936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.