Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10720 628 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) AT5G04970 617 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G02810 456 / 1e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 438 / 1e-147 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 399 / 1e-132 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 382 / 2e-126 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33220 363 / 4e-119 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) AT3G60730 357 / 7e-117 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26440 358 / 1e-116 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02320 351 / 2e-114 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028882 [exp] 918 / 0 AT5G04970 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015210 [exp] 415 / 1e-138 AT4G02330 556 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031470 [exp] 411 / 3e-137 AT4G02330 573 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10010309 [exp] 397 / 1e-132 AT1G02810 575 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 384 / 6e-127 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029866 [exp] 397 / 4e-126 AT1G02810 511 / 6e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10017375 [exp] 372 / 2e-123 AT3G43270 525 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 367 / 2e-120 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10010170 [exp] 374 / 2e-118 AT3G43270 628 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G011100 [exp] 691 / 0 AT3G10720 744 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.010G247700 [exp] 686 / 0 AT3G10720 746 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.002G202600 [exp] 436 / 6e-147 AT1G02810 749 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G127000 [exp] 429 / 4e-144 AT1G02810 712 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022800 [exp] 418 / 1e-139 AT4G02330 571 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 384 / 9e-127 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134500 [exp] 375 / 9e-124 AT4G33220 677 / 0.0 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) Potri.006G134600 [exp] 368 / 9e-121 AT2G26440 683 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 365 / 7e-120 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 362 / 9e-119 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10008937 pacid=23175123 polypeptide=Lus10008937 locus=Lus10008937.g ID=Lus10008937.BGIv1.0 annot-version=v1.0 ATGGCCTCCCACCTCCCATTCTCCTCCTCCTACTCCGCCGCCGTCATTCTCTTCTCCCTATCTCTCCTCGCTCTAATCTCCTCATCATCCTCCGACTCCG ACACACCCACCGCCGCCTGCAAATCCAGTCTCTACCCGAAGCTCTGCCGCTCCCTCCTCACCCCAACCTTCGGCTCCTCCTCCTCCTCAAACGACTCATA TTCCTTAGGCAAGTTCTCCGTCAAGCAATGCACCAAGCAAGCCAGCCGGCTCTCCAAGCTCCTCCACACCCTCCTCTCCCATCGCGACAAGGACCGCTCC CGCCTCACCTCCCAGGAGATCGGAGCGCTCGAGGACTGCCTCGAGCTCTCCGACACCAATTTCGAGTTCCTCGAGTCGGTGTCGTCTGAGCTCGAGGACG CCGAGGCCATGAACGACGAGCTGGTCGAGAAGGTCACTACTCTGCTCAGCGGCACGGTTACCAATCAGCAGACTTGTATTGACGGGCTGGTTCAGGCTTC CGGATCGGGGACTGGGTCGGTTTTGGTCGGGTCGGGGTTCGGTTCGACCATGGGGAATTCGACCCAGTTGTACAGCGTGGCGCTTGGTTTGGTTACCCGG GCTTTGGACCGGAAGTTAAGGAAGAGTAGGAAGAGTAAGAAGAAGGGCGGCGGTGGTGGGTTCGAGTTTAACGGCGGTCCCATTGGCCGCGGAGTTCGTG AGCCACTTCAGAATCTCATCAAGGAATTACACAAAAGGTCTGGTTGCGGAAAATCTGGTAGCTGCTCGAGGATAGAGCGCAATTTGCAGGCCGAAAACAA CTCCGGAGGAGGAGGAGGAGGAAATAACGGCATTCTTATCTACGATTACGTCATTGTCAGTCCTTCCGGCGGCGAGAATTTCACTTCCATTACCGAAGCG GTAGCGATTGCACCCAACAATACCAAACCGGAAGATGGCTATTTCGTTATCTACGCCAAAGAAGGAACCTACGAAGAGTACGTCGTCATCACTAAACACA AGAAGAACATTATGCTCATCGGCGACGGAATCAACCGCACCGTCATTACCGGCAACCACAGCGTCGTCGACGGCTGGACCACTTTCAATTCTTCCTCTTT CGCTGTTTCCGGGGAGAGATTCGCCGCCGTGGACGTCACCTTCCGAAACACCGCCGGGCCGGAGAAGCACCAAGCCGTGGCGCTGAGAAACAACGCCGAC CTATCGACGTTCTACCGCTGCAGCTTCGAGGGTTACCAAGACACGCTCTACGCTCACTCCCTCCGACAATTCTACCGAGAATGCGACGTATACGGCACCG TCGACTTCATCTTTGGAAACGCCGCCGCCGTCTTCCAAAACTGCAACCTTTACGCCCGGAAGCCCCTGCCCAACCAGAAGAACGCGTTCACGGCCCAGGG CCGGACCGACCCATACCAGGTCACCGGAATATCGATCCAGAACTGCACCATCGAGGCGGCGCCGGATCTGAAGGCGAGCGTGGCGAATTCGACGATGAAC TATTTGGGGCGGCCGCGGAAGCTGTACTCTAGGACGGTGGTGATGGAGTCGTACATTGGGGATCTGATCCAACCGGTTGGGTGGTTGGAGTGGAACGGGT CGGTCGGGTTGGATACGCTGTATTACGGGGAGTTCAGGAATTATGGGCCGGGTTCGGATACTGGCCGGAGGGTGCAGTGGCCCGGGTATAGTTTGATGAA TGTGACGGATGCGGTGAATTTCACGGTTTATAATTTGACGTTGGGGGACACGTGGCTGCCGTACGCTGACGTTCCGTTCAACGGAGGGTTGATGCAGTCT TGA
AA sequence Show only first row Show all	>Lus10008937 pacid=23175123 polypeptide=Lus10008937 locus=Lus10008937.g ID=Lus10008937.BGIv1.0 annot-version=v1.0 MASHLPFSSSYSAAVILFSLSLLALISSSSSDSDTPTAACKSSLYPKLCRSLLTPTFGSSSSSNDSYSLGKFSVKQCTKQASRLSKLLHTLLSHRDKDRS RLTSQEIGALEDCLELSDTNFEFLESVSSELEDAEAMNDELVEKVTTLLSGTVTNQQTCIDGLVQASGSGTGSVLVGSGFGSTMGNSTQLYSVALGLVTR ALDRKLRKSRKSKKKGGGGGFEFNGGPIGRGVREPLQNLIKELHKRSGCGKSGSCSRIERNLQAENNSGGGGGGNNGILIYDYVIVSPSGGENFTSITEA VAIAPNNTKPEDGYFVIYAKEGTYEEYVVITKHKKNIMLIGDGINRTVITGNHSVVDGWTTFNSSSFAVSGERFAAVDVTFRNTAGPEKHQAVALRNNAD LSTFYRCSFEGYQDTLYAHSLRQFYRECDVYGTVDFIFGNAAAVFQNCNLYARKPLPNQKNAFTAQGRTDPYQVTGISIQNCTIEAAPDLKASVANSTMN YLGRPRKLYSRTVVMESYIGDLIQPVGWLEWNGSVGLDTLYYGEFRNYGPGSDTGRRVQWPGYSLMNVTDAVNFTVYNLTLGDTWLPYADVPFNGGLMQS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10720			Plant invertase/pectin methyle...		Lus10008937 [exp]	0	1
AT5G04970			Plant invertase/pectin methyle...		Lus10028882 [exp]	1.0	0.9474
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	4.0	0.9456
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008936 [exp]	4.7	0.8888
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	5.2	0.9329
					Lus10021242 [exp]	5.9	0.9204
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10013884 [exp]	6.0	0.9014
AT4G02870			unknown protein		Lus10027591 [exp]	6.5	0.8327
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014606 [exp]	6.6	0.9294
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10007119 [exp]	7.6	0.8141
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012395 [exp]	7.7	0.8592

Compare expression of checked genes

Lus10008937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.