Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45550 404 / 2e-136 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45580 399 / 9e-135 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT2G45570 399 / 1e-134 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G61040 392 / 7e-132 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT1G33720 385 / 4e-129 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45560 383 / 3e-128 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT1G33730 317 / 1e-104 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT4G12300 309 / 2e-99 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT5G44620 307 / 1e-98 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G12320 305 / 5e-98 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028881 [exp] 749 / 0 AT2G45550 477 / 4e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028897 [exp] 627 / 0 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028857 [exp] 622 / 0 AT2G45550 459 / 2e-158 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008918 [exp] 622 / 0 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028898 [exp] 613 / 0 AT2G45550 488 / 1e-169 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028896 [exp] 608 / 0 AT2G45550 464 / 3e-160 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008917 [exp] 603 / 0 AT2G45550 479 / 8e-166 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008935 [exp] 600 / 0 AT2G45550 476 / 5e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008936 [exp] 596 / 0 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113900 [exp] 536 / 0 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 492 / 3e-171 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 412 / 5e-140 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 401 / 1e-135 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 396 / 8e-134 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 395 / 2e-133 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 394 / 6e-133 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G118500 [exp] 333 / 1e-108 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.006G094700 [exp] 322 / 8e-105 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.012G137200 [exp] 320 / 9e-104 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10008938 pacid=23175132 polypeptide=Lus10008938 locus=Lus10008938.g ID=Lus10008938.BGIv1.0 annot-version=v1.0 ATGGAGTTATTACTACTAATGGTGACCTCTTGCGTACTCTGCCTCCTCACCACCTTCGCCATGCTCTTCCGTTTCGAATCCGACAAGCATACTCCGGTGA TCAAACTTCCACCGGGACCTCTCCGCCTTCCGATCATAGGCAACCTCCACAATCTAGGTAGCCAACTCCACAAATCACTAGCTGATCTCGCCAAGATTCA CGGCCCCTTAATGAGCCTGAAACTCGGCCAGATAACCACAATCGTCGCTTCTTCTCCTGCAATAGCCAAAGAGATCCTCCAAAAGCACGACCATGTCCTC TCTGACCGTAACCCCATCCTCGCCGTCCAAGCCCACGATCACCACAAACTCGGCATGCCTTTGCTCCCCGTGGGGCCGACATGGAGGAACCTGAGGAAAG TATGTAACACATATCTCTTAAGTGCACGGAACCTGGATTCGAACCAGGACATCTACAGGAACAAGGTTGAGGAGCTCCTTGAAGGGGTTCGACGAAATGC CTACGAGGGGAAGGCCATGGATATTGGCGAAGCCATGTTCAGGACGATTTTGAGCGCCTTGTCGTCGACTCTTCTTCCGTTGGATTTGGAAGGAGTTGCG GAATTCAAAGAGGCCGCGAGGGGAATAGTAGAAGACTCTGGGAAGCCGAATTTGGGAGACTTTTTCCCAGCTCTGGCTACGATGGATTTGCAAAGGATAC AGAGGAGGATGATGTCTCATATGGCAAAGGGGTTGGATTTGTTCGGGAGGATGATCGACGAACGATTGACGGAGCGACAATCGGCGGAGAAGTATGTCGC GAGTAATGACATGTTGGATACGCTGTTGGACGTTATGGATCAAGAGAACGGCGAGGCCTCCATGGATATAAACCTCATCAAACACTTGTTCTTGGATTTA TTTGTTGCTGGGACTGATACTACTTCAATCACATTAGAATGGGCAATGGCAGAGTTGCTCCGCAATCCCAACATATTAGCTAAAGCAAGGGAGGAAATGG ACCAAATTGTTGGGAAAGGAAACAATCTTAAGGAATCCGACATCCTTAAACTACCTTATTTACAAGCAATACTCAAAGAAACATTCAGATTACACCCAGC AACTCCGCTGCTACTTCAGAGAAAGGCAAGATCGGATGTCGAAATATGCGGATTCATTGTTCCTGAAGGAGCACAGATTCTAGTAAATGCATGGGCTATA GGCAGAGATCCGGAAACATGGGAAAATCCCAACTCGTTCATGCCTGAAAGGTTTATAGGATCGAAAATTGATGTTCGTGGACACACTTTTGAGCTGATCC CGTTCGGGGGAGGAAGAAGAATTTGCCCTGGATTGCCATTGGCAATGAGGATGTTACCTATGATGTTGGGTTCGTTGGTTCATTCGTTTGATTGGAAGCT GGAGGATGGAGTTGAGCCGGAGAGTTTGGATATGAAGGAGAAGTTTGGGGTCAGTTTGCCGAAGGCCAAACCGTTGTTTGCTATTCCCATGCTGCGATGA
AA sequence Show only first row Show all	>Lus10008938 pacid=23175132 polypeptide=Lus10008938 locus=Lus10008938.g ID=Lus10008938.BGIv1.0 annot-version=v1.0 MELLLLMVTSCVLCLLTTFAMLFRFESDKHTPVIKLPPGPLRLPIIGNLHNLGSQLHKSLADLAKIHGPLMSLKLGQITTIVASSPAIAKEILQKHDHVL SDRNPILAVQAHDHHKLGMPLLPVGPTWRNLRKVCNTYLLSARNLDSNQDIYRNKVEELLEGVRRNAYEGKAMDIGEAMFRTILSALSSTLLPLDLEGVA EFKEAARGIVEDSGKPNLGDFFPALATMDLQRIQRRMMSHMAKGLDLFGRMIDERLTERQSAEKYVASNDMLDTLLDVMDQENGEASMDINLIKHLFLDL FVAGTDTTSITLEWAMAELLRNPNILAKAREEMDQIVGKGNNLKESDILKLPYLQAILKETFRLHPATPLLLQRKARSDVEICGFIVPEGAQILVNAWAI GRDPETWENPNSFMPERFIGSKIDVRGHTFELIPFGGGRRICPGLPLAMRMLPMMLGSLVHSFDWKLEDGVEPESLDMKEKFGVSLPKAKPLFAIPMLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008938 [exp]	0	1
AT1G05310			Pectin lyase-like superfamily ...		Lus10010470 [exp]	1.0	0.9785
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10021955 [exp]	4.5	0.9721
AT3G12955			SAUR-like auxin-responsive pro...		Lus10031790 [exp]	4.7	0.9590
AT5G48920		TED7	tracheary element differentiat...		Lus10028626 [exp]	5.5	0.9747
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008635 [exp]	6.3	0.9668
AT1G55180		PLDALPHA4, PLDE...	phospholipase D alpha 4 (.1)		Lus10036361 [exp]	7.9	0.9731
AT1G23390			Kelch repeat-containing F-box ...		Lus10013033 [exp]	9.2	0.9593
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030457 [exp]	9.2	0.9708
AT5G04010			F-box family protein (.1)		Lus10035421 [exp]	9.5	0.9604
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	10.2	0.9714

Compare expression of checked genes

Lus10008938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.