Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10690 1022 / 0 GYRA DNA GYRASE A (.1) AT3G23890 48 / 5e-05 ATTOPII, TOPII topoisomerase II (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028879 [exp] 1343 / 0 AT3G10690 1344 / 0.0 DNA GYRASE A (.1) Lus10019720 [exp] 48 / 5e-05 AT3G23890 1685 / 0.0 topoisomerase II (.1.2) Lus10016397 [exp] 48 / 6e-05 AT3G23890 1682 / 0.0 topoisomerase II (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247000 [exp] 1087 / 0 AT3G10690 1366 / 0.0 DNA GYRASE A (.1) Potri.009G058900 [exp] 49 / 3e-05 AT3G23890 1691 / 0.0 topoisomerase II (.1.2) Potri.001G264000 [exp] 45 / 0.0003 AT3G23890 1716 / 0.0 topoisomerase II (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03989 [flax] [poplar] DNA_gyraseA_C DNA gyrase C-terminal domain, beta-propeller PF00521 [flax] [poplar] DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A
Representative CDS sequence Show only first row Show all	>Lus10008940 pacid=23175173 polypeptide=Lus10008940 locus=Lus10008940.g ID=Lus10008940.BGIv1.0 annot-version=v1.0 ATGGCTCTTTCCTCCACTTTCCGCTTATCTTCTACTCTCCTCCATCACCACCTCCCTCTCTCATCCTTCGCCTTCCTCCGCCGCACCTTCACCCTTCATT CCCGTTCACTCTCTAAAATCCCCCGCCGCGTCGGCAACCGTGCACGGCCTATTCAAGCCCGTCTCGGAGATGATGCCGATGGCCAGAACGGGTCTCTTCT GGTGAATGGTTCGGATGGTGGTGCTGCTAGAGATGGTCGCGTGATTCCTATTGAGCTTCACAAAGAGGCTACTGAGGCTTACATGTCCTACGCCATGTCG GTTTTGCTTGGCAGGGCTTTGCCTGACGTTAGGGATGGGCTGAAGCCTGTTCACCGGAGGATACTGTTTGCCATGCATGAACTGGGGCTCTCGTCAAGGA AGCCGTTTAAGAAGAGTGCTAGAGTTGTTGGAGAGGTACTTGGTAAGTTTCACCCGCATGGAGATACTGCTGTATATGATGCATTGGTCAGGATGGCCCA GGATTTCTCATTGAGGTGCCCTCTTGTCCAAGGCCACGGAAATTTTGGTTCCATTGATGCAGATCCAGCTGCTGCTATGCGTTATACAGAATGCAGGCTG CAAAGAACAGCTGAATCTGTAGACTTTAGCTTACTAGAGTTGCTGAAAGCTGAATCTGTAGACTTTAGCTTACTAGAGTTGCTGAAAGCTGAATCTGTAG ACTTTAGCTTACTAGAGTTGCTGAAAGCTGAATCTGTAGACTTTAGCTTACTAGAGTTGCTGAAAGCTGAATCTGTAGACTTTAGCTTACTAGAGTTGCT GAAAGCTGAATCTGTAGACTTTAGCTTACTAGAGTTGCTGAAAGCTGAATCTGTAGACTTTAGCTTACTAGAGTTGCTGAAAGCTGAATCTGTAGACTTT AGCTTACTAGAGTTGCTGAAAGCTGAATCTGTAGACTTTAGCTTACTAGAGTTGCTGAAAGCTGAATCTGCACTGACAGAAGCAGTTTTGCTGGCTGACC TGGAACAAGATACGGTTAATTTTGTCCCCAATTTTGATAATTCTCAAAAGGAACCTTCACTTTTGCCTGCCCGGCTTCCAACACTGTTATTGAATGGTTC TTCTGGAATAGCGGTGGGCATGGCAACAAATATTCCTCCCCATAACCTTGGAGAGATAGTGGATGTCCTCTGTGCATTAATTCACAACCCAGAAGCTACT TTGCAAGAATTGTTGGAATATATGCCGGGGCCCGATTTCCCTACTGGAGGCCTAATCATGGGAAATCTAGGGATTTTGGAGGCCTATCGAACCGGACGCG GGCGAATCATAGTCAGGGGTAAGACAGAGGTTGAATTACTTGACTCGAAAACGAAGAGGTCTGCTATAATTATAAAGGAGATTCCATACCAGACGAACAA AGCATCACTTGTGGAAAAGATTGCTGAACTTGTAGAGAGCAAGAGTATTGATGGGATTTCTGATATCCGCGATGAAAGTGATCGTACTGGGATGCGTGTT GTAATCGAGCTGAAACGTGGAGCAGAACCTGCACTTGTTTTGAATAACCTTTATCGTCTAACTCCACTTCAGTCTAGTTTTAGCTGCAACATGGTCAGTA TTCTGGATGGACAACCAAAACAAATGGGGTTGAAAGAAATGCTCAAGACATTTTTGGACTTTCGGTGTTCTGTTGTTGAGCGACGTGCTCGATTCAAGCT TTCACAAGCTCAGGATAGAAGACATATTGTTGAGGGCATTGTGGTGGGGCTTGATAATTTGGATCACATAATTCAAGTCATTAAGGAATCTCCCAACAAT TCAGCTGCAATTTCTGGTCTAATGAAAGAATTCAACATTTCTCAGAAACAAGCTGAAGCTATCTTAGATATAAGCCTCCGAAGGCTCAACCATTTGGAGA GAAGTAAATATGTTGATGAAAGAAAATCTTTAATTGCACAAATCTCAAAACTAGAGGAACTACTATCCAGCAAGGAAAAGATGCTACATTTGATAGAGCA AGAAGCAGTTGAGCTCAAAAATACATTTTCAAATCCAAGGCGCTCAATGTTGGAATATTTTGACGACGGTCAGCTTGATGATATAGATGCTATTCCTAAT GAGGAAATTCTGATGGCTATTAGTGAAAAGGGTTATGTCAAGCGGATGAAGCCCAACACCTTCAATCTTCAGAAACGTGGAACCGTTGGTAAATCTGTTG GCAAATTGAGAGTAAATGATGCAATGTCTGATTTTGTGGTCTGTCGATCACATGATTACATTCTTTATTTTAGCGACCGAGGTATTGTCTACTCAGAACG TGCTTACAAAATACCAGAATGCACTAGGAGTGCTGCTGGCACTCCACTGGTTCAGGATCAGTATCTGCTGATGCTCACAGTCAATGGTTACATCAAGAAA GTATCTCTGAGTGTTTTCTCTGCAATACGCTCAACTGGAATTATAGCAATTCAATTGGTTCCGGGTGATGAGTTGAAATGGGTTCGGTGTTGCACAAATG ACGATCTTGTAGCAATGGCTTCGCAGAACGGATATGTTATCCTAAGTTCCTGTGACAATATCCGAGCACTTAGCAGAAATACCAGGGGTGGTGTGGCCAT GAGATTAAAAGATGGCGACAAGATGGCCAGCGTGGACATTATACCCGCTGCCATGAGGAAAGACTTGGAAAAGGCAATGGAAGATCCTGAGACCATCAGC AAGGGCAGTGGACCTTGGTTGTTGTTCATCTCCGAGAGTGGCCATGGCAAGAGGGTTCCTCTAAGCAGCTTCAAAATCCTACCTCTAAATAGAGTTGGTT TAATTGGATCTAAGTTTTCGGAGGAAGAAGGGTGTTTGGCAGCAGTCTTTGTGGTTGGTTTCTCATCAGCAGAGGACGGCGAAAGCGATGAACAGGTAGT TCTAGTAAGTCAAAGCGGCACTGTGAACAGAATCAAAGTGCGTGAAATCTCCATACAGTCACGTTATGCAAGGGGAGTGATTTTGATGCGTCTGGACTAT GCTGGAAAGATTCAATCAGCATCTCTGATATCAGCAACGGAGGATGAGCACGAAACAGATGACGACTCTACAGCAGTAGCAGCAGACGAAGCAGAATCGC CAGTTTCCATGGCTTCTTAA
AA sequence Show only first row Show all	>Lus10008940 pacid=23175173 polypeptide=Lus10008940 locus=Lus10008940.g ID=Lus10008940.BGIv1.0 annot-version=v1.0 MALSSTFRLSSTLLHHHLPLSSFAFLRRTFTLHSRSLSKIPRRVGNRARPIQARLGDDADGQNGSLLVNGSDGGAARDGRVIPIELHKEATEAYMSYAMS VLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKSARVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRCPLVQGHGNFGSIDADPAAAMRYTECRL QRTAESVDFSLLELLKAESVDFSLLELLKAESVDFSLLELLKAESVDFSLLELLKAESVDFSLLELLKAESVDFSLLELLKAESVDFSLLELLKAESVDF SLLELLKAESVDFSLLELLKAESALTEAVLLADLEQDTVNFVPNFDNSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPHNLGEIVDVLCALIHNPEAT LQELLEYMPGPDFPTGGLIMGNLGILEAYRTGRGRIIVRGKTEVELLDSKTKRSAIIIKEIPYQTNKASLVEKIAELVESKSIDGISDIRDESDRTGMRV VIELKRGAEPALVLNNLYRLTPLQSSFSCNMVSILDGQPKQMGLKEMLKTFLDFRCSVVERRARFKLSQAQDRRHIVEGIVVGLDNLDHIIQVIKESPNN SAAISGLMKEFNISQKQAEAILDISLRRLNHLERSKYVDERKSLIAQISKLEELLSSKEKMLHLIEQEAVELKNTFSNPRRSMLEYFDDGQLDDIDAIPN EEILMAISEKGYVKRMKPNTFNLQKRGTVGKSVGKLRVNDAMSDFVVCRSHDYILYFSDRGIVYSERAYKIPECTRSAAGTPLVQDQYLLMLTVNGYIKK VSLSVFSAIRSTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGYVILSSCDNIRALSRNTRGGVAMRLKDGDKMASVDIIPAAMRKDLEKAMEDPETIS KGSGPWLLFISESGHGKRVPLSSFKILPLNRVGLIGSKFSEEEGCLAAVFVVGFSSAEDGESDEQVVLVSQSGTVNRIKVREISIQSRYARGVILMRLDY AGKIQSASLISATEDEHETDDDSTAVAADEAESPVSMAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	0	1
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10010428 [exp]	1.4	0.9678
AT4G38890			FMN-linked oxidoreductases sup...		Lus10035460 [exp]	3.2	0.9480
AT5G57590		BIO1	biotin auxotroph 1, adenosylme...		Lus10003630 [exp]	3.5	0.9479
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10016274 [exp]	3.9	0.9502
AT4G23940			FtsH extracellular protease fa...		Lus10023066 [exp]	4.0	0.9532
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040048 [exp]	4.0	0.9443
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10022181 [exp]	4.2	0.9298
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10018037 [exp]	5.3	0.9152
AT3G61690			nucleotidyltransferases (.1)		Lus10030265 [exp]	5.3	0.9490
AT1G30680			toprim domain-containing prote...		Lus10023379 [exp]	5.5	0.9318

Compare expression of checked genes

Lus10008940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.