Plant FIBer expression Database

Lus10008941 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G04910 225 / 7e-75 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028878
[exp]
154 / 9e-48 AT5G04910 136 / 6e-41 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G012100
[exp]
265 / 1e-90 AT5G04910 245 / 8e-83 unknown protein
PFAM info
Representative CDS sequence
>Lus10008941 pacid=23175149 polypeptide=Lus10008941 locus=Lus10008941.g ID=Lus10008941.BGIv1.0 annot-version=v1.0
ATGGATGATTTCGCGAAGAAGGTTTCACTATCTGATGAAATGGAGATCGAAGCTGAGACTCAGGGCTCCTCAAAATCCTCTGAAACCCTACACATGCTTC
GTAGATTCCTTCAAATTCAGCAGCGTAGAGCCCTAGCTTATGCCAGGCTCAAACGAGGCTTTACTGAATATATGGCTTCAAAAGGGGAGGTGGCTTACCA
GCAACTTTGCTCAGAGATCACAACTGAGTTTAACGACTGCTCAAAACAAGTCCTGGAAATCGAGGCCCTATTTCTGGACCCTGATCACAGCCGATCTGAT
CTAGCACAGTTGCTGAGAGCTGTTCAAACACAGGAGAAGCTGAAATTACAACTGACTGCAACAATCCAACTATTGAAGAAAGCTGGTCGGCCGTCTGAAC
GCCTGGTGAGCCATGCAAATTGCAGGTTTAACAAGCCTATGGAACACCAGTGCGTCCACTTGCACGAGATAACAGAGGATGAAGGGACCGAAGAAGCAGA
AGCAAATGCAGAATACGACAATGCCCTCAATGAAGCCATTAGAGGAGTGCAGGATGCAGTCACTAACATTAATGAACACATAGAAGAAGTCAAGTACGAA
ATTGCTGCCATCGAAATGGAATGA
AA sequence
>Lus10008941 pacid=23175149 polypeptide=Lus10008941 locus=Lus10008941.g ID=Lus10008941.BGIv1.0 annot-version=v1.0
MDDFAKKVSLSDEMEIEAETQGSSKSSETLHMLRRFLQIQQRRALAYARLKRGFTEYMASKGEVAYQQLCSEITTEFNDCSKQVLEIEALFLDPDHSRSD
LAQLLRAVQTQEKLKLQLTATIQLLKKAGRPSERLVSHANCRFNKPMEHQCVHLHEITEDEGTEEAEANAEYDNALNEAIRGVQDAVTNINEHIEEVKYE
IAAIEME

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G04910 unknown protein Lus10008941
[exp]
0 1
AT1G64750 DSS1(I), ATDSS1... deletion of SUV3 suppressor 1(... Lus10030906
[exp]
1.7 0.9017
AT5G59140 BTB/POZ domain-containing prot... Lus10040746
[exp]
5.7 0.8795
AT5G52200 AtI-2 inhibitor-2, phosphoprotein ph... Lus10005751
[exp]
7.1 0.8439
Lus10035378
[exp]
10.3 0.7938
AT1G03330 Small nuclear ribonucleoprotei... Lus10029641
[exp]
10.4 0.8692
AT5G22080 Chaperone DnaJ-domain superfam... Lus10004099
[exp]
10.8 0.8750
AT1G02160 Cox19 family protein (CHCH mot... Lus10024637
[exp]
11.9 0.8248
AT5G47890 NADH-ubiquinone oxidoreductase... Lus10030922
[exp]
13.7 0.8641
AT3G48140 B12D protein (.1) Lus10042151
[exp]
15.0 0.8748
AT4G14965 ATMAPR4 membrane-associated progestero... Lus10042022
[exp]
15.3 0.8566

Lus10008941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.