Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04920 533 / 0 EAP30/Vps36 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028877 [exp] 733 / 0 AT5G04920 598 / 0.0 EAP30/Vps36 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G246400 [exp] 556 / 0 AT5G04920 553 / 0.0 EAP30/Vps36 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF11605 [flax] [poplar] Vps36_ESCRT-II Vacuolar protein sorting protein 36 Vps36 CL0123 [flax] [poplar] HTH PF04157 [flax] [poplar] EAP30 EAP30/Vps36 family
Representative CDS sequence Show only first row Show all	>Lus10008942 pacid=23175133 polypeptide=Lus10008942 locus=Lus10008942.g ID=Lus10008942.BGIv1.0 annot-version=v1.0 ATGGCAACGCCACCGCACAACTTCTTCCCGCCGGCATCCGTCACAACAAGCGGCCGTCCAGTCCTCCAGTCCGACGAGGTCGAGTGCCAACTTCTCTCAG CCGTGGACCTCGAATCGGAAGACAACGCTGGCAGTAGCAGCAGCAGCAGCTCCGATTTTGCTCCTCTGAAATCAGGCCTTCTCATCTTAACAACCCATCG CCTCCTCTGGCTGCCTTCCAATCCCACCATCGCACCTGCAATCGCCATCCCTCTCGGATCAGTCACCCACATTTTCTCGGCGAAGAAGTCAATCAAGGCA ATGTTCCATTCTCCTAGGTTCCGGTTCCAGGTGTCGATGAACTCCAGGAGTACTGTTGTTACAGTGGTGGTCAGGGGCAAAGGGAATGATTGGGAGGTAT TCTTCTCTAAACTGTGGGAGAGCTGGAGGGCCAGAGCTTGGGAGAGCTCTGTTGTTGAGTCTAAGGAAGCTAGTGTTTCTGGACCGAGTTCAACTTCTGG TGGTGGCCTTTATTCCAGTGATGGGTCGGTGAGGATGGTTGGGGTGTCTGGGATTTTGAGGAAGGAACAAGAGATGTGGGAGAATACCGATAAGAGCTTG CAGGATGCTTTCCAGGACTTGAATGCTCTCATGAGCAAGGCTAAGGAGATGATGACACTGGCAGAGAAAATGAGGCAAAAGCTTTTATCTGCCTCCAATT CTCAAACCAGTTCAGCCAATGATGATGAAATGGGTTCCAAGGAGATGCAAGATTGGTTGTTAAGCGTTGGTATCATATCCCCCGTTACAAAAGAATCTGC AGGTGCCTTGTATCATCAGCAATTGTCTCGTCAGTTGTCAGATTTTGTTAGCATTCCACTTGAAAGAGCAGGAGGAATGATCAACATGATAGACATCTAC TGTCTTTTTAATCGTGCTCGTGGCACAGAATTGATTTCTCCTGAAGATTTGTTGCAAGCATGCTCTCTTTGGCAGAAGTTTGATGTACCCGTCATGCTTC GGAAATTCGACAGTGGTGTGATGGTCATCCAGAATAAGTCCCACAGCGATGAAGAGGTATTTGCTCGAATCAAAGCTCTCGTGACAAAGCCAGACGCTCT TAGGTCTGGAATAACAGCTAGTGATGCTGCAATGACTTTGGGTATCGCTCCAGCGATGGCCAAAGAGCATCTCCTCTCTGCTGAGAGCAAAGGTTTGCTC TGCAGGGATATTAGCCCTGATGGCTTTCACTTTTACGTCAACATCTTCCCTGAGACTGATCCCAACAATATGTACCTAGTGAAAGAGCATAGTATATACT CCTCCTGGATCAAAGCTACAGCTGCTTCAGCTTCATAG
AA sequence Show only first row Show all	>Lus10008942 pacid=23175133 polypeptide=Lus10008942 locus=Lus10008942.g ID=Lus10008942.BGIv1.0 annot-version=v1.0 MATPPHNFFPPASVTTSGRPVLQSDEVECQLLSAVDLESEDNAGSSSSSSSDFAPLKSGLLILTTHRLLWLPSNPTIAPAIAIPLGSVTHIFSAKKSIKA MFHSPRFRFQVSMNSRSTVVTVVVRGKGNDWEVFFSKLWESWRARAWESSVVESKEASVSGPSSTSGGGLYSSDGSVRMVGVSGILRKEQEMWENTDKSL QDAFQDLNALMSKAKEMMTLAEKMRQKLLSASNSQTSSANDDEMGSKEMQDWLLSVGIISPVTKESAGALYHQQLSRQLSDFVSIPLERAGGMINMIDIY CLFNRARGTELISPEDLLQACSLWQKFDVPVMLRKFDSGVMVIQNKSHSDEEVFARIKALVTKPDALRSGITASDAAMTLGIAPAMAKEHLLSAESKGLL CRDISPDGFHFYVNIFPETDPNNMYLVKEHSIYSSWIKATAASAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04920			EAP30/Vps36 family protein (.1...		Lus10008942 [exp]	0	1
AT5G45360			F-box family protein (.1)		Lus10037278 [exp]	3.7	0.6903
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10031445 [exp]	34.1	0.6542
AT2G44200			CBF1-interacting co-repressor ...		Lus10038730 [exp]	44.4	0.6399
AT4G03000			RING/U-box superfamily protein...		Lus10021953 [exp]	50.8	0.6297
AT5G52300		LTI65, RD29B	RESPONSIVE TO DESSICATION 29B,...		Lus10038862 [exp]	53.9	0.5459
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10038995 [exp]	71.3	0.6147
AT4G31340			myosin heavy chain-related (.1...		Lus10041099 [exp]	86.7	0.5416
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10043482 [exp]	132.2	0.5826
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10000114 [exp]	134.3	0.5694
AT1G26900			Pentatricopeptide repeat (PPR)...		Lus10037194 [exp]	223.2	0.5417

Compare expression of checked genes

Lus10008942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.