Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04930 1635 / 0 ALA1 aminophospholipid ATPase 1 (.1) AT3G13900 691 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 690 / 0 ALA3 aminophospholipid ATPase 3 (.1) AT1G17500 688 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G27870 688 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 683 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT1G68710 682 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 674 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 674 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 673 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028875 [exp] 2352 / 0 AT5G04930 1694 / 0.0 aminophospholipid ATPase 1 (.1) Lus10034872 [exp] 1940 / 0 AT5G04930 1712 / 0.0 aminophospholipid ATPase 1 (.1) Lus10033406 [exp] 1939 / 0 AT5G04930 1704 / 0.0 aminophospholipid ATPase 1 (.1) Lus10028873 [exp] 1913 / 0 AT5G04930 1676 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008947 [exp] 1895 / 0 AT5G04930 1644 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008473 [exp] 687 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 685 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 680 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 679 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G246200 [exp] 1806 / 0 AT5G04930 1693 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014600 [exp] 1798 / 0 AT5G04930 1665 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014400 [exp] 1729 / 0 AT5G04930 1610 / 0.0 aminophospholipid ATPase 1 (.1) Potri.006G109200 [exp] 1301 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1) Potri.016G138000 [exp] 1279 / 0 AT5G04930 861 / 0.0 aminophospholipid ATPase 1 (.1) Potri.003G043300 [exp] 679 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G191400 [exp] 674 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.001G197500 [exp] 674 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 667 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.012G058000 [exp] 650 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10008945 pacid=23175145 polypeptide=Lus10008945 locus=Lus10008945.g ID=Lus10008945.BGIv1.0 annot-version=v1.0 ATGGATCCAGCTTCTCCAATCCAGAACGATGAAATCACTCTGATTTCGGACTCCAGGAGAACTCCTTCTCCCCAGCATTCACGAGCGTGTTCAGCAGCAG CAGCTAGGGAGGTTGGTTTCAATGATTTGGCGCCTAAACCTGTGATGAACGGATCCAACAAGAGGGCTGAACAGGAGGTGTATAGTATGTCTCAGAAGGA GATCAGCGAAGAAGACGCTAGGTTTGTATACATAAATGACCCTGGAAGGACTAACAATAAATTTGAGTTTGCTGGCAACTCTGTTAGGACTTCCAAGTAC TCTGCTATTTCATTCTTGCCTAGGAATTTGTTTGAACAGTTTCATAGAGTTGCATACATTTATTTCCTTATAATAGCCGTCCTCAATCAGCTGCCCCAGC TTGCCGTGTTTGGCCGTGGAGCTTCCATTTTGCCACTTGCTTTTGTGCTGCTAGTGACAACAATAAAGGATGCTTATGAGGATTGGAGGAGGCATAGGGC TGATAAGATTGAGAACAATAGATTGGCATGGGTTTTGGTGGATGGTCTGTTCCAGCAGAAGAAATGGAAGGATATTCAGGTTGGCGAAATAATAAAGGTC GAATCTAATGGTACTCTTCCTAGTGATATGGTATTGCTCTCTACTAGTGACTCTACTGGGGTTGCTTATGTGCAGACGATAAACTTGGATGGAGAGTCGA ATTTGAAAACTCGGTATGCAAAGCAGGAGACCCTTCCCAAGAATCCGGAGGATGGAATTTATACTGGTTTGATCAAGTGTGAGAAACCTAATAGGAACAT TTATGGATTCCATGGGAACATGGAGATCGATGGGAAGCGCCTGTCCCTTGGGCCCTCCAACATTATTCTTCGAGGGTGCGACCTGAAGAATACGGCTTGG GTTCTCGGGGTTGCAGTGTATTGTGGCCCTGAGACGAAAGCTATGTTGAATAGCTCAGGATCCCCTTCAAAGAGAAGTCGGCTCGAGACAAGCATGAACT TTGAAATCATCATACTGTCTTTGTTTCTTGTTGTCTTGTGTACAGTCGTATCTGTATGTGCTGCAATATGGCTGAGGAGAGACAGGGATGAGTTGGATAC TGTGCCTTTTTATAGGCGTAAGGATTACAGCAAAGGTGTGCCAGTTAACTTCAATTATTATGGATGGGGAATGGAGATAGTCTTCACATTCCTGATGGCA GCAATTGTGTTCCAGATCATGATACCTATTTCTTTGTACATTTCTATGGAGCTTGTTCGGGTTGGTCAGGCATATTTCATGATTCGAGATTCCCAGATGT ATGATGAGGCGTCGAATTCAAGGTTTCAATGTCGTGCTTTGAATATAAACGAAGATTTGGGGCAGATAAAGTACGTGTTCTCGGACAAAACTGGGACACT TACAGAAAATAAGATGGAATTTCAATGTGCAAGCATATGGGGAGTGGATTACAGTGGTGCTATGGCTATCTCAGCAGATGACGGACACTATGCTCAATTG GATGGTTTTACTGTGAGGCCAAAGATGAGGGTTAAGATTGATCCTCATCTTCTGAAAGTGTTAAGAGGTGGAAATACGGAAAAGGAATCTAAACATATAT GTGATTTCTTCCTAGCATTAGCAGCTTGTAATACAATTGTGCCGCTCATCGTTGACACATCTGATCCTGTTGCTAAGTTGATGGATTACCAAGGGGAATC TCCTGATGAACAAGCACTAGCTTATGCTGCTGCTGCATATGGATTTATGCTTATTGAACGAACTTCAGGCCATATAGTTATTGATGTTTTGGGTGAAAGG CAAAGGTTCAGTGTTTTGGGTTTGCATGAGTTTGACAGTGATAGGAAGAGGATGTCTGTTATTTTAGGCTTTCCGGACAAATCTGTCAAAATCTTTGTAA AGGGGGCCGATACATCCATGTTCACAGTCATCGATAAAACTTCAAGCATGGACGTAGTACGTGCAACTGAAGGCCATCTTCATTCTTACTCCTCCCTAGG CCTGAGAACGCTTGTTATCGGAATGCATGAATTGAGTGATCTGGAGTTTGAGCAATGGCACTCTTCTTTCGAGGCTGCCAGTACAGCATTAATTGGCAGG GCCGCTTTGCTTCGTAAGGTTGCTAGCAATGTTGAGAACCAACTTAAATTACTGGGTGCTTCTGCTATTGAAGATAAACTTCAACAAGGTGTTCCAGAAG CCATACAATCTCTGAGGACTGCAGGAATTCAAGTTTGGGTGTTAACTGGAGATAAACAAGAAACGGCAATATCAATTGGTTATTCTTCAAAGCTCCTAAC CAACAAGATGACACATATCACTATCAACAAGAACTCTAAGGAGTCATGTAGAAAGAGTTTATTGGATGCTTTGCTTATATGTAAGAAGCTCAGCAATGTG TCCGACACACTTGAGAACGAAGAAATTTCTTCATCTACTGGAAATTCAGTTGCTTTAATTATAGATGGGACAAGCCTTGTTTATATACTTGACAGTGAAC TAGAAGAACAGCTCTTTGAATTGGCCAGTAACTGCTCTGTGGTTCTATGTTGCCGGGTTGCTCCTCTGCAAAAAGCTGGTATTGTTGCCCTTGTGAAGAA TCGAACAGCTGACATGACACTTTCCATTGGAGATGGTGCAAATGATGTTTCAATGATCCAAATGGCTGATGTTGGGGTCGGAATCAGCGGGCAAGAGGGT CGGCAAGCTGTAATGGCATCTGATTTTTCCATGGGGCAATTCAGATTCTTAGTTCCTCTTTTGCTGGTCCACGGACATTGGAATTACCAGCGAATGAGTT ACATGATAATTTACAACTTCTACAGGAACGCAGTGTTTGTTTTCGTCTTGTTTTGGTATGTGCTCTTCACTGCTTTCACTTTGACGACTGCCATTAACGA GTGGAACAGTGTGCTGTATTCAGTAATATACACAGCAGTGCCGACTGTTGTTGTTGGCGTTCTGGACAAGGATTTAAGTCGGAAAACCTTACTCAAGTAT CCTCAGCTTTACGGAGCAGGTCAACGGCGAGAAAGTTACAATTCAAAATTGTTCTGGCTGACAATGATGGACACTCTGTGGCAAAGCGTGGTTGTTTTCT TCGTCCCCTTCTTTGCTTACTGGAACAGCACCATTGACACAGCGAGCATAGGGGACCTCTGGACACTAGCGGTAGTTATTTTGGTCAATCTGCATCTAGC AATGGACGTCACCCGGTGGAATTGGCTTATGCATGCAAGCATATGGGGATCCATCGTTGCAACTTTCATCTCTATAGTCGTCATTGATTCCATACCGAAT TTAGCTGGTTACTGGGCGTTTTTTCATGTCGCGGAGACGGGGCTGTTCTGGTTTTGCTTGCTGGGTATAGTTGTAACAGCACTGATCCCGCGGCTGGTAG TGAAAACACTGCATCAATACTGCAACCCTGGTGACATCCAAATTGCGAAAGAGGCTGAGAAATTCAAAACATTAAGGGATGTTGTTGGATGTGTAGAAGT GGAAATGGGTCCGAGATGA
AA sequence Show only first row Show all	>Lus10008945 pacid=23175145 polypeptide=Lus10008945 locus=Lus10008945.g ID=Lus10008945.BGIv1.0 annot-version=v1.0 MDPASPIQNDEITLISDSRRTPSPQHSRACSAAAAREVGFNDLAPKPVMNGSNKRAEQEVYSMSQKEISEEDARFVYINDPGRTNNKFEFAGNSVRTSKY SAISFLPRNLFEQFHRVAYIYFLIIAVLNQLPQLAVFGRGASILPLAFVLLVTTIKDAYEDWRRHRADKIENNRLAWVLVDGLFQQKKWKDIQVGEIIKV ESNGTLPSDMVLLSTSDSTGVAYVQTINLDGESNLKTRYAKQETLPKNPEDGIYTGLIKCEKPNRNIYGFHGNMEIDGKRLSLGPSNIILRGCDLKNTAW VLGVAVYCGPETKAMLNSSGSPSKRSRLETSMNFEIIILSLFLVVLCTVVSVCAAIWLRRDRDELDTVPFYRRKDYSKGVPVNFNYYGWGMEIVFTFLMA AIVFQIMIPISLYISMELVRVGQAYFMIRDSQMYDEASNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSGAMAISADDGHYAQL DGFTVRPKMRVKIDPHLLKVLRGGNTEKESKHICDFFLALAACNTIVPLIVDTSDPVAKLMDYQGESPDEQALAYAAAAYGFMLIERTSGHIVIDVLGER QRFSVLGLHEFDSDRKRMSVILGFPDKSVKIFVKGADTSMFTVIDKTSSMDVVRATEGHLHSYSSLGLRTLVIGMHELSDLEFEQWHSSFEAASTALIGR AALLRKVASNVENQLKLLGASAIEDKLQQGVPEAIQSLRTAGIQVWVLTGDKQETAISIGYSSKLLTNKMTHITINKNSKESCRKSLLDALLICKKLSNV SDTLENEEISSSTGNSVALIIDGTSLVYILDSELEEQLFELASNCSVVLCCRVAPLQKAGIVALVKNRTADMTLSIGDGANDVSMIQMADVGVGISGQEG RQAVMASDFSMGQFRFLVPLLLVHGHWNYQRMSYMIIYNFYRNAVFVFVLFWYVLFTAFTLTTAINEWNSVLYSVIYTAVPTVVVGVLDKDLSRKTLLKY PQLYGAGQRRESYNSKLFWLTMMDTLWQSVVVFFVPFFAYWNSTIDTASIGDLWTLAVVILVNLHLAMDVTRWNWLMHASIWGSIVATFISIVVIDSIPN LAGYWAFFHVAETGLFWFCLLGIVVTALIPRLVVKTLHQYCNPGDIQIAKEAEKFKTLRDVVGCVEVEMGPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008945 [exp]	0	1
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10041808 [exp]	3.0	0.8705
AT1G23880			NHL domain-containing protein ...		Lus10039421 [exp]	3.2	0.8791
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10028348 [exp]	3.5	0.8787
AT4G38200			SEC7-like guanine nucleotide e...		Lus10001620 [exp]	5.6	0.9019
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10012198 [exp]	6.9	0.8713
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039509 [exp]	7.9	0.8491
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038381 [exp]	8.8	0.8685
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10041798 [exp]	12.4	0.8642
AT2G02910			Protein of unknown function (D...		Lus10036741 [exp]	13.4	0.8618
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10010779 [exp]	14.8	0.8510

Compare expression of checked genes

Lus10008945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.