Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04890 100 / 3e-23 RTM2 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) AT3G10680 67 / 8e-12 HSP20-like chaperones superfamily protein (.1) AT2G27140 64 / 9e-12 HSP20-like chaperones superfamily protein (.1) AT5G20970 59 / 6e-10 HSP20-like chaperones superfamily protein (.1) AT1G54400 48 / 2e-06 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028874 [exp] 275 / 2e-88 AT5G04890 103 / 4e-24 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Lus10008426 [exp] 66 / 7e-12 AT2G27140 111 / 7e-29 HSP20-like chaperones superfamily protein (.1) Lus10003356 [exp] 54 / 7e-08 AT2G27140 103 / 3e-26 HSP20-like chaperones superfamily protein (.1) Lus10032902 [exp] 50 / 6e-07 AT1G54400 89 / 4e-22 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 49 / 2e-06 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 46 / 2e-05 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G013800 [exp] 121 / 5e-31 AT5G04890 135 / 3e-36 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Potri.010G245500 [exp] 103 / 7e-25 AT5G04890 113 / 2e-28 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Potri.008G014000 [exp] 78 / 1e-15 AT3G10680 84 / 1e-17 HSP20-like chaperones superfamily protein (.1) Potri.013G054800 [exp] 69 / 9e-14 AT1G54400 98 / 6e-26 HSP20-like chaperones superfamily protein (.1) Potri.013G054700 [exp] 63 / 1e-11 AT1G54400 93 / 3e-24 HSP20-like chaperones superfamily protein (.1) Potri.004G191200 [exp] 62 / 2e-10 AT2G27140 106 / 3e-27 HSP20-like chaperones superfamily protein (.1) Potri.004G191101 [exp] 62 / 2e-10 AT2G27140 109 / 2e-28 HSP20-like chaperones superfamily protein (.1) Potri.009G153100 [exp] 58 / 2e-09 AT2G27140 110 / 5e-29 HSP20-like chaperones superfamily protein (.1) Potri.013G054900 [exp] 54 / 2e-08 AT1G54400 97 / 3e-25 HSP20-like chaperones superfamily protein (.1) Potri.009G153200 [exp] 54 / 2e-08 AT2G27140 89 / 9e-22 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10008946 pacid=23175154 polypeptide=Lus10008946 locus=Lus10008946.g ID=Lus10008946.BGIv1.0 annot-version=v1.0 ATGAGAAGATTTGGGTTAGGAGGGATGAGTACTACGAATTCAGGCGTTCCGGCGATCCAGTTCGAGGATTTTCAGCCGATTTCGGAATGGAAAGAAGCAG AGTTGCTACCCCCATCGCATTCCCAACCTCAAAAGGCTTCCCTTTTGCATATACACCTTCCTGAGTTCAAGAACGAGCAGCTGAAGGTGACGTTTGTGCA GGCCACCAGAGCCCTTCGAGTTAGCGGCGAGCGGCCACTCTCCGACTCCACACGCAGCCGTTTCAACGTTGCTTTTGCCGTCCCGAACAACTGTGACGCC ACCCAAATACAAGGTGAGTTCCAGGATGGAGTCCTCGTCCTCACTATGCCCCAATTCCCTTCCACCACTCCCACCGCCATCCCCGCCGTCCCGCCTCCGG TGGCACCTCAACAACCTCTAGTTAAGGACGCACCATCACATCCTCCTCCTCCTCTATCTCCGGCCACCACGGTCAACAAACAGGACGCACCTCCATCAAA AGCAGCACCGTCGCCACCGCCACCGCAGGTTAACGATACTCCGAATAAGGACACCACAAAAGGCAAGAAAGCCGACGATGCGAAAACTGTCCCTCCGGCG GCAGAATCCAAATCGGCGCCGCCGCCTCAGGAGAAAGAGAAGGAAGGAAAAGTGCCGGATAATAACAATCCAATTAATTCGGAAGCAGATCGGCAGCAAG TATCTGGCTCCGCCAGCAAGAAAAGGAAACAGAGTTCTTCGGTGGCGGCTGCTGCGGCGGAGGAGTTAAGTTCTGGAAGCGTTAATGATGGATTTGATGG GGAAGGGGTGATGAGCGGCATCAAGAAACGGAAGGAAGGCTTGGCGGCGGCGGCGAAGGATGCTGCTGAGAGTGCAAGTGCGAAGATAGGTGATATCGGG GAGAAGGTGAAGGAATCGGCGGCGGCGGTGGACAAGAGTTCGACGTCGACCGGTAAGGGACAATTAGGCATAAAGGAGCGGATGGATGAGTTTGTGAGGG AAGAGAATAGACAGGCGATGGTGGGGATGAGTCTGGCGGTTATTGCAGCGGTGGCTGTCGGAGCCTTCGTTATTTATCGCTACAGATCTTCTTCTAGTTG A
AA sequence Show only first row Show all	>Lus10008946 pacid=23175154 polypeptide=Lus10008946 locus=Lus10008946.g ID=Lus10008946.BGIv1.0 annot-version=v1.0 MRRFGLGGMSTTNSGVPAIQFEDFQPISEWKEAELLPPSHSQPQKASLLHIHLPEFKNEQLKVTFVQATRALRVSGERPLSDSTRSRFNVAFAVPNNCDA TQIQGEFQDGVLVLTMPQFPSTTPTAIPAVPPPVAPQQPLVKDAPSHPPPPLSPATTVNKQDAPPSKAAPSPPPPQVNDTPNKDTTKGKKADDAKTVPPA AESKSAPPPQEKEKEGKVPDNNNPINSEADRQQVSGSASKKRKQSSSVAAAAAEELSSGSVNDGFDGEGVMSGIKKRKEGLAAAAKDAAESASAKIGDIG EKVKESAAAVDKSSTSTGKGQLGIKERMDEFVREENRQAMVGMSLAVIAAVAVGAFVIYRYRSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10008946 [exp]	0	1
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10028874 [exp]	1.7	0.9637
AT4G18340			Glycosyl hydrolase superfamily...		Lus10028122 [exp]	3.2	0.9577
AT4G18340			Glycosyl hydrolase superfamily...		Lus10042825 [exp]	5.3	0.9471
AT1G79480			Carbohydrate-binding X8 domain...		Lus10000278 [exp]	5.5	0.9381
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10025874 [exp]	6.0	0.9485
AT1G23530			unknown protein		Lus10030608 [exp]	6.5	0.9542
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10010362 [exp]	6.9	0.9532
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004600 [exp]	7.4	0.9515
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004546 [exp]	7.9	0.9402
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042712 [exp]	8.0	0.9145

Compare expression of checked genes

Lus10008946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.