Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04930 1592 / 0 ALA1 aminophospholipid ATPase 1 (.1) AT3G27870 673 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 668 / 0 ALA3 aminophospholipid ATPase 3 (.1) AT1G17500 660 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 652 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 650 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 648 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 646 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT3G25610 640 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 637 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028873 [exp] 2201 / 0 AT5G04930 1676 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008945 [exp] 1851 / 0 AT5G04930 1681 / 0.0 aminophospholipid ATPase 1 (.1) Lus10033406 [exp] 1851 / 0 AT5G04930 1704 / 0.0 aminophospholipid ATPase 1 (.1) Lus10034872 [exp] 1849 / 0 AT5G04930 1712 / 0.0 aminophospholipid ATPase 1 (.1) Lus10028875 [exp] 1840 / 0 AT5G04930 1694 / 0.0 aminophospholipid ATPase 1 (.1) Lus10022238 [exp] 665 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10013286 [exp] 664 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1) Lus10006881 [exp] 650 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 648 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G246200 [exp] 1707 / 0 AT5G04930 1693 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014600 [exp] 1695 / 0 AT5G04930 1665 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014400 [exp] 1662 / 0 AT5G04930 1610 / 0.0 aminophospholipid ATPase 1 (.1) Potri.006G109200 [exp] 1284 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1) Potri.016G138000 [exp] 867 / 0 AT5G04930 861 / 0.0 aminophospholipid ATPase 1 (.1) Potri.010G039900 [exp] 673 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 672 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.003G043300 [exp] 644 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 642 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 623 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10008947 pacid=23175131 polypeptide=Lus10008947 locus=Lus10008947.g ID=Lus10008947.BGIv1.0 annot-version=v1.0 ATGGATTCGCCACCTTCTCCAATCCCGTCGGAGCGCCTCTTGAACGATGATGCCTTCTCCAGGAAAAATGCTTCTTCAAGAGCAGGTTCAACCGTGGAGG TTGTTTTCAGTGATATGGAGCTTAAACCTGTGATGTATGGATCCAAGAAGGCTAATTCAGAGGTGTATGCTATGTCTCAAAGTGAGATCAACGAAGAAGA TGCTAGGTTTGTTTATATAAACGACCCTGGTAGGACGAATGAGAAATGTCAGTTCGCTAGGAACTCCATTAGCACTGCAAAATACTCAGTTTTTTCATTC TTGCCTAGGAATTTGTTTGAACAGTTTCATAGAGTTGCATACATTTATTTCCTCGTAATAGCCGTCCTCAATCAGTTGCCTCAGCTTGCTGTTTTTGGCC GTGGAGCTCCTCTTGTGCCACTTGCCTTTGTACTGCTAGTTACAGCTATTAAGGATGCTTATGAGGATTGGAGAAGGCACAAGGCAGATAAGATTGAGAA CAATCGATTTGCTTCTGTTTTGTTGAATGGTCGTTTCCAACGGACGAAATGGAAGCATATTCAGGCTGGCGAAATAATCAAGGTCGTAGCCAATGGTACT CTTCCTTGTGATATGGTATTGCTCTCCACCAGTGAGCCTCCAACTATCAACTTGGATGGAGAGTCGAACTTAAAGACCCGGTATGCAAAGCAGGAAACTA TTTCTTGGAATCCTGAGAGTCGAGAAATGCTTACCGGGCTGATCAAGTCTGAGAAACCTAACAGGAACATTTATGGATTCCATGGGAACATGGAGATTGA TGGCAAACGCCTGTCTCTTGGACCTTCGAATATTCTTCTTCGAGGTTGTGACCTGAAGAATACTGCTTGGGTTCTTGGGGTCGTTGTGTATTGTGGACCT GAGACTAAAGCTATGCTTAATAGTTCAGGGTCCCCTTCTAAGAGAAGCCGGCTCGAGACATGGATGAACTTCGAAATCATCATGCTCTCTTTCTTTCTTT TTATCTTGTGTACAGTTGTATCCGTATGTGCTGCTGTATGGTTGAGGCGCCACAAGGATAAGTTGGATACTATGCCTTTTTACAGGAGGAAGGATTTCAA TGAGGCTGACCCGCGTAACTATAATTATTATGGGTGGGGAATGGAGATATTATTCACATTCCTGATGGCTGTAATTGTGTTCCAGGTCATGATTCCTATT TCTCTATACATCTCTATGGAGCTTGTTCGGGTTGGTCAGGCCTATTTCATGATTCGAGATACACAAATGTATGATGAGGCATCAAATTCGAGGTTTCAGT GCCGAGCTTTGAATATAAACGAAGATTTAGGGCAGATAAAGTATGTATTCTCTGACAAAACTGGGACACTTACGGAAAACAAGATGGAATTTATGTGTGG AAGCATAGGGGGCGTAGATTACAGTGGTGCTATGGCCATATCCGAAGATAAGGGATACTCTGTACAAGTGGACGGAGTTACTGTGAGACCAAAGATGAGG GTGAAGGTTGATCCACAGCTTCTACAAGTGTTGCGAGGTGGAAACACTGATGAATTCAAACATGCCTGTGATTTCTTCCTTGCATTAGCAGCTTGTAATA CAATTGTTCCTCTCATTGTTGACTCATCTGAACCGGTTGCTAAGTTGATGGATTACCAAGGGGAATCTCCTGATGAACAAGCATTAGCTTCTGCTGCTGC TGCATATGGTTTTATGCTTATTGAACGAACTTCAGGTCATATAGTTATTGATGTTCTGGGTGAAAGGCAAAGGTTCAATGTTTTAGGCATGCACGAGTTT GACAGTGACAGGAAGAGGATGTCTGTGATATTAGGCTTTCCAGACAACTCTGTCAAAATCTTTGTAAAGGGAGCTGATACATCCATGCTAAGTATCATCG ATAAACCTTCAAGCATCGGCATACTATATGTGACCGAAGGTCATCTGCACTCGTACTCTTCGCTTGGCCTTAGAACACTTGTTATCGGGATACGAGAACT CAGTGATTCAGAATTTGAGCGGTGGAACTCTTCCTTTGAGGCTGCCAGTACAGCTTTGATTGGCAGGGCAGCTCTGCTCCGGAAGGTTGCCAGCAGTGTA GAAAACCAGCTTACCTTACTGGGTGCTTCTGCTATTGAAGATAAACTTCAACAAGGTGTCCCGGAAGCCATCGAGTCACTGAGGACTGCAGGAATTCAAG TGTGGGTTTTAACTGGTGATAAGCAAGGAACTGCCATATCAATTGGTTATTCCTCAAAGCTCCTAACTAACAAAATGACGCAGATTACCATCAATAGCAA CTCTAAGGATTCATGTAAGAAAAGTCTATCTGATGCTTTGCTTGTATGCAAGAAGCTCAGCAATTTATTGTCGGCGACAAATGATGATGAAGAAGAAATT TATGCCTTTGCTGAAAGCTCAGCGGCTTTAATTATAGATGGGACTAGCCTAGTCTATATCCTTGACAGTGAACTTGAAGAACAGCTGTTTGAATTGGCCA ACAAATGCTCTGTAGTTCTTTGTTGTCGGGTGGCTCCGCTGCAGAAAGCTGGAATTGTGGCCCTTGTTAAGAACAGGACCTCTGGCATGACTCTTTCCAT TGGAGATGGTGCAAATGATGTTTCTATGATCCAAATGGCTGACGTGGGAGTTGGAATCTGTGGACAGGAGGGTCGGCAAGCTGTAATGGCATCTGATTTT GCCATGGGACAGTTCAGATTCTTAGTTCCACTTCTTCTGGTCCATGGGCATTGGAATTACCAGCGCATGAGTTACATGATAATTTACAACTTCTACAGGA ATGCAGTGTTTGTTCTCGTATTGTTCTGGTATGTGCTCTTCACTGCCTTCACATTGACAACTGCCATCAACGAGTGGAACAGCGTATTGTATTCAGTGCT CTACACGGCACTTCCAACAGTCATCGTCGGAGTTCTCGACAAGGACTTAAGTCGGAAAACCCTCCTCAAGTACCCTCAGCTTTACGGAGCCGGTCACCGG CAAGAAAACTACAATTCGAAACTGTTCTGGCTGACGATGCTGGACACCGTGTGGCAAAGCGTGGTGGTTTACTTCATCCCTTGCTTTGCTTACTGGAGTA GCACCATCGACGGAGCGAGTATCGGGGATCTCTGGACTTTGGCAGTCGTGATCTTGGTCAATCTACATCTAGCAATGGACATCACACGGTGGAATTGGAT CATGCATGGAGTAATATGGGGATCCATTACTGCTACGTTTGTCTCGATAATTGTCATCGATTCTGTACCTAGTTTGCCTGGTTACTGGGCATTTTTCCAC ATCGCCAACACAGAGTTGTTCTGGTTATGCTTGGTTGGTATAGTTGTAGCAGCATTAATTCCCCGATTTGTTGTGAAAATTCTGTATCAATACTTTAAAC CTTGTGACATACAAATTGCCAAGGAGGCTGATAAATTTAAACCTCTTTAA
AA sequence Show only first row Show all	>Lus10008947 pacid=23175131 polypeptide=Lus10008947 locus=Lus10008947.g ID=Lus10008947.BGIv1.0 annot-version=v1.0 MDSPPSPIPSERLLNDDAFSRKNASSRAGSTVEVVFSDMELKPVMYGSKKANSEVYAMSQSEINEEDARFVYINDPGRTNEKCQFARNSISTAKYSVFSF LPRNLFEQFHRVAYIYFLVIAVLNQLPQLAVFGRGAPLVPLAFVLLVTAIKDAYEDWRRHKADKIENNRFASVLLNGRFQRTKWKHIQAGEIIKVVANGT LPCDMVLLSTSEPPTINLDGESNLKTRYAKQETISWNPESREMLTGLIKSEKPNRNIYGFHGNMEIDGKRLSLGPSNILLRGCDLKNTAWVLGVVVYCGP ETKAMLNSSGSPSKRSRLETWMNFEIIMLSFFLFILCTVVSVCAAVWLRRHKDKLDTMPFYRRKDFNEADPRNYNYYGWGMEILFTFLMAVIVFQVMIPI SLYISMELVRVGQAYFMIRDTQMYDEASNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFMCGSIGGVDYSGAMAISEDKGYSVQVDGVTVRPKMR VKVDPQLLQVLRGGNTDEFKHACDFFLALAACNTIVPLIVDSSEPVAKLMDYQGESPDEQALASAAAAYGFMLIERTSGHIVIDVLGERQRFNVLGMHEF DSDRKRMSVILGFPDNSVKIFVKGADTSMLSIIDKPSSIGILYVTEGHLHSYSSLGLRTLVIGIRELSDSEFERWNSSFEAASTALIGRAALLRKVASSV ENQLTLLGASAIEDKLQQGVPEAIESLRTAGIQVWVLTGDKQGTAISIGYSSKLLTNKMTQITINSNSKDSCKKSLSDALLVCKKLSNLLSATNDDEEEI YAFAESSAALIIDGTSLVYILDSELEEQLFELANKCSVVLCCRVAPLQKAGIVALVKNRTSGMTLSIGDGANDVSMIQMADVGVGICGQEGRQAVMASDF AMGQFRFLVPLLLVHGHWNYQRMSYMIIYNFYRNAVFVLVLFWYVLFTAFTLTTAINEWNSVLYSVLYTALPTVIVGVLDKDLSRKTLLKYPQLYGAGHR QENYNSKLFWLTMLDTVWQSVVVYFIPCFAYWSSTIDGASIGDLWTLAVVILVNLHLAMDITRWNWIMHGVIWGSITATFVSIIVIDSVPSLPGYWAFFH IANTELFWLCLVGIVVAALIPRFVVKILYQYFKPCDIQIAKEADKFKPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008947 [exp]	0	1
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Lus10029958 [exp]	1.4	0.8982
AT4G23840			Leucine-rich repeat (LRR) fami...		Lus10003886 [exp]	2.8	0.8793
AT1G11340			S-locus lectin protein kinase ...		Lus10006745 [exp]	4.9	0.8303
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Lus10020257 [exp]	6.3	0.7971
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10018698 [exp]	6.3	0.8391
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10025101 [exp]	8.3	0.8506
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Lus10035980 [exp]	8.4	0.7853
					Lus10011795 [exp]	9.5	0.7844
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10016439 [exp]	10.4	0.7988
AT1G12530			unknown protein		Lus10006705 [exp]	12.5	0.7686

Compare expression of checked genes

Lus10008947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.