Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27620 266 / 2e-87 unknown protein AT4G27610 262 / 5e-86 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028872 [exp] 555 / 0 AT4G27620 337 / 3e-115 unknown protein Lus10043458 [exp] 416 / 2e-146 AT4G27610 343 / 6e-118 unknown protein Lus10034127 [exp] 397 / 3e-137 AT4G27610 330 / 7e-111 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G042700 [exp] 386 / 2e-134 AT4G27610 403 / 2e-141 unknown protein Potri.013G076900 [exp] 365 / 3e-126 AT4G27610 339 / 5e-116 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008948 pacid=23175152 polypeptide=Lus10008948 locus=Lus10008948.g ID=Lus10008948.BGIv1.0 annot-version=v1.0 ATGAGACCAAAATCAAATGGGGTTGCTAGGGGCCATAAAAGGATTGACGGTGGAGGGCCAGGTTGGATTCTAATCGCTGGTGGTGCCTTGTTAAGTACGT TGTCAATCCGCCTTGGCTGCAAGCTGAAGCAGACTCTCGATTATAGGAGGGAAGCGAATGCTAGGAATGAGATTTTTTCTGATAGAAGGAGATCACCAGG TCGCCACATGCATTCAAATATGTACGCATTTACACAAGATGATGATAACTGTTTCGATTCTGCTTCTGGGAATGAAGGCATTGATGAAGCGAAATACCCT TCTAATGATCACACACTGTCTGAAACTGATGGTGCTCTCCCTTTGGTCGCGGTTAATGCCCCAGAATACCCTAGAGAGAACGGGGTTACATGGGTTTCAT CTCTTGATCGTCTCGAGTTGCCTCCTAAGCCATATCACCAGTCAAACGGCTTGGACTCGCCGTGTGTCTCCGATTCTGGTTCAGATATATTTAGCAAGCG AGAAGTGATACAAAAGTTGAGACAACAACTGAAAAGAAGGGATGACATGATAATCGAGATGCAGGATCAGATCACGGAGCTGCAGAACTCAATCAGTTCT CAACTGGTGATTTCCAGTAGCTTGCAGTCTCAGCTTGATGCAGCCAACAAGGATCTCTTAGATTCCGAGATAGAAATCCAGAGGCTGAGAAAGGCCATTG CTGACCACTGTTTGAAACATGCACATGTTGATGGAAAAGCTTCAGTTGTCAATAACAATAACGTCTGGTCGTCACCTGAGGTATCAAATGGCCACGCAAA CGGGTATTCTGATGCTGACAGCACCACGTCTGAGTTCCCAGAAAAGGTGAGGATTGATGCGGAGAAGATGGAGATGCTTAAGAGGGAAGTAGGAGAACTG AAGGAAGTATTGGAAGGGAAGGAATACTTGATGCAGAGCTACAAGGAGCAGAAATCAGAGCTTTCAGTGAAGATCAAGGAGCTGCAGCAAAGATTGGATG CGCAGCTACCTAACATCTTCTAG
AA sequence Show only first row Show all	>Lus10008948 pacid=23175152 polypeptide=Lus10008948 locus=Lus10008948.g ID=Lus10008948.BGIv1.0 annot-version=v1.0 MRPKSNGVARGHKRIDGGGPGWILIAGGALLSTLSIRLGCKLKQTLDYRREANARNEIFSDRRRSPGRHMHSNMYAFTQDDDNCFDSASGNEGIDEAKYP SNDHTLSETDGALPLVAVNAPEYPRENGVTWVSSLDRLELPPKPYHQSNGLDSPCVSDSGSDIFSKREVIQKLRQQLKRRDDMIIEMQDQITELQNSISS QLVISSSLQSQLDAANKDLLDSEIEIQRLRKAIADHCLKHAHVDGKASVVNNNNVWSSPEVSNGHANGYSDADSTTSEFPEKVRIDAEKMEMLKREVGEL KEVLEGKEYLMQSYKEQKSELSVKIKELQQRLDAQLPNIF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27620			unknown protein		Lus10008948 [exp]	0	1
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	7.3	0.7502
AT5G47900			Protein of unknown function (D...		Lus10019798 [exp]	10.0	0.7495
AT5G12970			Calcium-dependent lipid-bindin...		Lus10017816 [exp]	10.2	0.6477
AT2G41120			unknown protein		Lus10033361 [exp]	14.8	0.7334
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10008419 [exp]	18.8	0.7167
					Lus10039327 [exp]	19.0	0.7090
AT2G29970			Double Clp-N motif-containing ...		Lus10038320 [exp]	19.4	0.7280
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10000675 [exp]	19.7	0.7271
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10003299 [exp]	23.4	0.7113
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	25.5	0.7151

Compare expression of checked genes

Lus10008948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.