Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06600 1856 / 0 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G11910 1853 / 0 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT3G58250 149 / 2e-39 TRAF-like family protein (.1) AT3G58270 130 / 9e-33 Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.1), Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.2) AT3G58360 125 / 2e-31 TRAF-like family protein (.1) AT3G58210 122 / 7e-30 TRAF-like family protein (.1) AT3G58340 121 / 1e-29 TRAF-like family protein (.1) AT3G58350 114 / 2e-27 RTM3 RESTRICTED TEV MOVEMENT 3 (.1) AT2G05420 110 / 4e-26 TRAF-like family protein (.1) AT3G58260 110 / 5e-26 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043456 [exp] 2052 / 0 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 2016 / 0 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10029309 [exp] 1838 / 0 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10028871 [exp] 1068 / 0 AT5G06600 1351 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034129 [exp] 193 / 1e-55 AT5G06600 164 / 2e-46 ubiquitin-specific protease 12 (.1.2.3) Lus10025569 [exp] 152 / 1e-39 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10019772 [exp] 146 / 3e-35 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10027030 [exp] 125 / 5e-31 AT5G06600 120 / 8e-30 ubiquitin-specific protease 12 (.1.2.3) Lus10013378 [exp] 122 / 7e-28 AT3G43590 256 / 1e-74 zinc knuckle (CCHC-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G245100 [exp] 2011 / 0 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G012600 [exp] 2009 / 0 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 1941 / 0 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 1900 / 0 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.001G130700 [exp] 111 / 2e-26 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.003G103200 [exp] 108 / 2e-25 AT3G17380 251 / 2e-82 TRAF-like family protein (.1) Potri.005G179500 [exp] 113 / 3e-25 AT3G49600 1245 / 0.0 ubiquitin-specific protease 26 (.1) Potri.008G163300 [exp] 112 / 1e-24 AT1G04300 846 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.010G075000 [exp] 110 / 4e-24 AT1G04300 855 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.002G081600 [exp] 109 / 5e-24 AT3G49600 1251 / 0.0 ubiquitin-specific protease 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain CL0072 [flax] [poplar] Ubiquitin PF12436 [flax] [poplar] USP7_ICP0_bdg ICP0-binding domain of Ubiquitin-specific protease 7
Representative CDS sequence Show only first row Show all	>Lus10008949 pacid=23175126 polypeptide=Lus10008949 locus=Lus10008949.g ID=Lus10008949.BGIv1.0 annot-version=v1.0 ATGCTAGTGCCCCAGACTGACTTTGTCGATGGTCCTCAGCCAATGGAAGTAGTACCAGCAGAGCCAGCAACTACAGCTGATGCTCAGTCAGTCGTCGATG ATCCACCATCAGGAAGGTTTACCTGGACAGTTGACAACTTTGCAAGGCTCAACACCAAGAAATTGTATTCCGATGTTTTTCTTGTTGGAGGTTATAAATG GCGGATACTGGTTTTTCCCAAGGGTAACAATGTGGACCATCTGTCCATGTACTTAGATGTTGCAGACTCTTCAACTCTGCCATATGGTTGGAGTAGATAT GCTCAGTTCAGCTTGACTGTTGTTAATCAAATACATCAAAAGTGCTCAGTTCGAAAAGAGACCCAGCACCAGTTCAATGCACGTGAGAGTGACTGGGGAT TTACTTCATTCATGCCACTTGGGGAATTGTATGATCCTAGTAGAGGTTATCTCGTTAATGATACATGTATAATAGAGGCAGATATTGCTGTCCGGAGAAT TACTGATTATTGGTCCCATGATTCAAAAAAAGAAACTGGTTATGTTGGACTTAAAAACCAAGGAGCTACTTGCTACATGAACTCTCTTCTTCAGACACTC TACCACATTCCCTACTTCAGAAAGGCTGTATATCACATGCCAACAACTGAGAATGACATGCCAACAGGAAGCATTCCTCTTGCTTTGCAGAGTTTGTTCT ATAAACTTCAATACAGTGACACTAGTGTAGCAACAAAAGAGCTGACAAAGTCTTTTGGCTGGGACACTTACGATTCTTTCATGCAGCATGATGTGCAAGA ACTTAACAGGGTTCTTAGCGAAAAACTTGAAGACAAAATGAAGGGTACGGTTGTGGAGGGAACAATACAACAGTTGTTTGAAGGGCACCATATGAATTAC ATAGAGTGCATAAATGTGGATTACAAGTCAACCAGAAAGGAATCATTTTATGATCTTCAACTTGATGTCAAAGGTTGTCGAGATGTCTATGCCTCTTTTG ATAAGTATGTTGAAGTAGAACGTCTTGAAGGGGATAACAAGTATCATGCGGAACAGCATGGTTTGCAGGACGCCAAGAAGGGGGTCCTGTTTATTGACTT TCCTCCTGTTCTTCAACTTCAATTGAAAAGATTTGAGTATGACTTTATGCGAGATACGATGGTCAAGATAAATGATCGCTATGAATTCCCTTTGCGACTT GATCTTGATAGAGAGAATGGAAAATATTTGTCACCAGATGCAGACAAATGCGTCCGGAATGTTTACACTCTCCACAGTGTTTTGGTTCACAGTGGCGGTG TGCATGGTGGACACTATTATGCGTATATCAGACCAACTCTTTCAGATCAATGGTTCAAGTTTGATGATGAGCGGGTAACCAAAGAGGATATGAAAAGAGC ACTAGATGAGCAGTATGGTGGCGAAGAAGAGTTGCCGCAGACGAATCCTGGCTTCAATAATTCACCGTTTAAGTTCACAAAATATTCAAATGCTTATATG CTTGTGTATATACGGGAGACCGACAAGGAAAAGATAATCTGTAATGTGGACGAAAAGGATATTGCAGAACACTTGAGGATAAGGTTGAAGAAAGAACAAG AAGAAAAGGAGCATAAGAAAAAGGAAAAATCAGAAGCTCATTTGTATACTATCATAAAGGTTGCACGTGGCGAGGATCTTATTGAACAGATTGGAAAGGA TATTTATTTTGATCTTGTTGATCATGACAAAGTTCACAGCTTTCGAATCCAGAAGCAGATGCCCTTCACCCTGTTCAAGGAAGAAGTTGCAAAAGAGTTT GGAATACCCGTTCAATTTCAACGTTTCTGGCTATGGGCCAAGCGACAGAACCATACATACCGTCCAAATCGCCCTTTGACTCCTCAAGAAGAAGCACAGT CTGTTGGTCAATTGAGAGAAGTATCGAACAAAGCAAATAATGCAGAGCTCAAATTATTTTTGGAAGTGGAACTGGGACCGGATCTGCGTCCTACTGCTCC TCCTGACAGGACTAAGGAGGATATTTTGCTGTTCTTTAAACTATATGACCCAATGAAAGAAGAACTCAGGCACTTCCCTTGTCTGTACATCGGGTCTATG TTTGTAAAGGGCAGTGGAAAGCCGATGGAGATTTTGACCAAGTTAAATGAAATGGCTGGCTATGCTCCCGACGAAACGATTGAGATTTACGAGGAGATAA AGTTTGAACCTCATGTTATGTGTGAACCCATTGACAAGAAGATTGCATTTCGCTCTAGCCAGCTTGAAGACGGAGACATAGTCTGCTTTCAGAAGCCCCC TTCTGGGTGTGGGGAACCATGTCGCTATCCTGATGTACCATCTTTTCTTGAATATGTCCATAATCGACAGGGCGTCCGCTTTCGATCATTAGAGAAACCG AAAGAGGATGAATTCTCCTTAGAACTGTCAAAGCTTCACACTTACGATGATGTTGTTGAAAGACTAGCTGGTCATCTTGGGTTGGATGACCCATCCAAAA TTAGGCTTACCTCTCATAATTGTTACTCCCAGCAACCTAAACCTCAACCCATCAAATACCGAGGATTAGATCATCTGGCTGATATGCTAGTGCATTACAA CCAGACATCTGACATTCTATACTATGAAGTGCTTGATATTCCTCTACCAGAGCTGCAAGGTCTCAAAACTTTGAAAGTTGCATTCCACCATGCAAGCAAG GATGAGGTAGTAATTCATACTATTAGACTGCCAAAGCAGAGTACTGTTGGTGATGTCATCAATGACCTCAAAACCAAGGTAGAGTTGTCTCACCCCAATG CTGAACTTCGATTGCTTGAGGTGTTCTATCACAAGATCTACAAGATCTTCCCACCCAATGAGAAGATTGAGAATATCAATGACCAATACTGGACACTTCG TGCAGAGGAGGTCCCTGAAGAGGAGAAACAGATTGGCCCTGACGACCGTTTGATTCACGTGTATCATTTCATGAAGGACACAGCTCAAAACCAGCAAGTT CAAAATTTCGGAGAACCATTTTTCCTGGTAATCCGTGTGGGGGAGACCCTAGCTGAAGTGAAAGTTCGTATCCAGAAAAAATTGCAGGTTCCTGATGAGG ACTTTTCGAAGTGGAAGTTTGCTTTTCTGTCGCTTGGCCGGCCGGAGTACCTTGAAGATGGTGATGTGGTTTCTGCTCGATTTCAAAGAAGGGACGTATA TGGTGCTTGGGAGCAGTATCTAGGACTGGAGCATGCTGATAGTGCTCCTAAGAGATCATATGCAGCTAACCAGAACCGTCACACATATGAGAAGCCTGTA AAAATCTATAACTAG
AA sequence Show only first row Show all	>Lus10008949 pacid=23175126 polypeptide=Lus10008949 locus=Lus10008949.g ID=Lus10008949.BGIv1.0 annot-version=v1.0 MLVPQTDFVDGPQPMEVVPAEPATTADAQSVVDDPPSGRFTWTVDNFARLNTKKLYSDVFLVGGYKWRILVFPKGNNVDHLSMYLDVADSSTLPYGWSRY AQFSLTVVNQIHQKCSVRKETQHQFNARESDWGFTSFMPLGELYDPSRGYLVNDTCIIEADIAVRRITDYWSHDSKKETGYVGLKNQGATCYMNSLLQTL YHIPYFRKAVYHMPTTENDMPTGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNY IECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLRL DLDRENGKYLSPDADKCVRNVYTLHSVLVHSGGVHGGHYYAYIRPTLSDQWFKFDDERVTKEDMKRALDEQYGGEEELPQTNPGFNNSPFKFTKYSNAYM LVYIRETDKEKIICNVDEKDIAEHLRIRLKKEQEEKEHKKKEKSEAHLYTIIKVARGEDLIEQIGKDIYFDLVDHDKVHSFRIQKQMPFTLFKEEVAKEF GIPVQFQRFWLWAKRQNHTYRPNRPLTPQEEAQSVGQLREVSNKANNAELKLFLEVELGPDLRPTAPPDRTKEDILLFFKLYDPMKEELRHFPCLYIGSM FVKGSGKPMEILTKLNEMAGYAPDETIEIYEEIKFEPHVMCEPIDKKIAFRSSQLEDGDIVCFQKPPSGCGEPCRYPDVPSFLEYVHNRQGVRFRSLEKP KEDEFSLELSKLHTYDDVVERLAGHLGLDDPSKIRLTSHNCYSQQPKPQPIKYRGLDHLADMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHASK DEVVIHTIRLPKQSTVGDVINDLKTKVELSHPNAELRLLEVFYHKIYKIFPPNEKIENINDQYWTLRAEEVPEEEKQIGPDDRLIHVYHFMKDTAQNQQV QNFGEPFFLVIRVGETLAEVKVRIQKKLQVPDEDFSKWKFAFLSLGRPEYLEDGDVVSARFQRRDVYGAWEQYLGLEHADSAPKRSYAANQNRHTYEKPV KIYN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10008949 [exp]	0	1
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011285 [exp]	1.4	0.9679
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10040481 [exp]	2.8	0.9650
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10017680 [exp]	5.2	0.9273
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10038084 [exp]	5.7	0.9530
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000471 [exp]	5.9	0.9345
AT3G08530			Clathrin, heavy chain (.1)		Lus10037845 [exp]	6.6	0.9484
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10038694 [exp]	6.7	0.9404
AT5G27970			ARM repeat superfamily protein...		Lus10000943 [exp]	8.0	0.9275
AT3G45190			SIT4 phosphatase-associated fa...		Lus10016088 [exp]	8.1	0.9233
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10002076 [exp]	8.2	0.9192

Compare expression of checked genes

Lus10008949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.