Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55570 110 / 1e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028870 [exp] 188 / 1e-62 AT5G55570 114 / 2e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G085700 [exp] 55 / 9e-10 AT5G55570 68 / 2e-14 unknown protein Potri.011G085501 [exp] 0 / 1 AT5G55570 114 / 1e-31 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008950 pacid=23175174 polypeptide=Lus10008950 locus=Lus10008950.g ID=Lus10008950.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCTCTTCTGATTCTTGCGCCGATGGAATCTAGGGCGATTCCTCCACTGAATAGATTGAAGCGAGAAGCCAATTGTTCAAGACAGCAAGGGA AAAGAAGAAGAAGAAGAGGTTCAAGGATTGCTGCAATGGACGCGGATTTAGTTGTATCGACGACCGCCGTAACGCAGCAGGCGGTTACGTGGGAGATTGC GGTGGGAGCTATAGCCGGAGTGACGCCGTTCGTGGTTGCCGGGATAGAGTTCAGCAAAAGAATAATGGCACAGAGAAGATGTGAATTGTGCGATGGGTCA GGGCTGATTCTAATGGATGATGATGATAAGAAAGAGTATTGTCGCTGCCCAGGATGTGGTGGATTTCTACCATGGCAGTCCTGGAAAAGATTCTTCACCG GCTAA
AA sequence Show only first row Show all	>Lus10008950 pacid=23175174 polypeptide=Lus10008950 locus=Lus10008950.g ID=Lus10008950.BGIv1.0 annot-version=v1.0 MASPLLILAPMESRAIPPLNRLKREANCSRQQGKRRRRRGSRIAAMDADLVVSTTAVTQQAVTWEIAVGAIAGVTPFVVAGIEFSKRIMAQRRCELCDGS GLILMDDDDKKEYCRCPGCGGFLPWQSWKRFFTG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55570			unknown protein		Lus10008950 [exp]	0	1
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10026238 [exp]	2.0	0.9469
AT1G53670		MSRB1, ATMSRB1	methionine sulfoxide reductase...		Lus10013727 [exp]	2.4	0.9436
					Lus10017075 [exp]	2.6	0.9364
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Lus10037808 [exp]	3.5	0.9418
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10030141 [exp]	3.9	0.9431
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	4.5	0.9399
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	5.5	0.9380
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10017193 [exp]	6.0	0.9333
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Lus10005106 [exp]	6.3	0.9361
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Lus10026795 [exp]	7.7	0.9302

Compare expression of checked genes

Lus10008950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.