Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16010 244 / 2e-80 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT2G38050 61 / 1e-10 DWF6, DET2, ATDET2 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT1G72590 60 / 4e-10 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT3G55360 53 / 7e-08 ECR, CER10, ATTSC13, TSC13 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT2G16530 52 / 2e-07 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028869 [exp] 160 / 5e-49 AT5G16010 123 / 2e-35 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10021127 [exp] 74 / 2e-15 AT2G38050 256 / 3e-87 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10017183 [exp] 74 / 3e-15 AT2G38050 138 / 2e-64 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10028371 [exp] 66 / 6e-12 AT2G16530 336 / 4e-115 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10042055 [exp] 63 / 4e-11 AT2G16530 347 / 8e-120 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10001695 [exp] 51 / 5e-07 AT3G55360 540 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10005162 [exp] 49 / 1e-06 AT3G55360 541 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10041820 [exp] 0 / 1 AT2G16530 289 / 2e-96 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G245266 [exp] 257 / 2e-85 AT5G16010 291 / 2e-99 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245332 [exp] 256 / 5e-85 AT5G16010 289 / 1e-98 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G013100 [exp] 247 / 2e-81 AT5G16010 298 / 4e-102 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012800 [exp] 237 / 2e-77 AT5G16010 266 / 3e-89 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245200 [exp] 234 / 3e-76 AT5G16010 295 / 9e-101 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012700 [exp] 215 / 6e-69 AT5G16010 278 / 2e-94 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.016G110600 [exp] 72 / 3e-14 AT2G38050 350 / 1e-122 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.013G134433 [exp] 70 / 1e-13 AT2G38050 303 / 3e-104 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.005G047800 [exp] 69 / 2e-13 AT2G38050 295 / 8e-101 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.004G163600 [exp] 69 / 6e-13 AT2G16530 418 / 6e-147 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF02544 [flax] [poplar] Steroid_dh 3-oxo-5-alpha-steroid 4-dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10008951 pacid=23175180 polypeptide=Lus10008951 locus=Lus10008951.g ID=Lus10008951.BGIv1.0 annot-version=v1.0 ATGATGAGCAGCTGGATTACGGAGCTGATATTCTTCCGCCCTCTGCCAATCGTGGCGGTGATGTCGGTGGTGAGCGCGGTGTCGCTGGCCAACGCCGGAT TGTCGGAGGTGAGAGGCGTCCACATGAAATACTCCAAGTTCTTCTCCCCCGGCGCTAATACTGTTGTTACTAATGGCAATAATGCTAAGGAAACAACAAC GACGACAACCGCTGCAGCAGCATCAATCTCGAGCAGAAACGGAATGCTGTTGGCCTACACGCCTGCCTTCGTCTCCGCTTTCTCTTCCTTAATTCTGCTC TTCATCAACAACAATGGTGGTAGTGGTGATGTATCATCGGGTTTTAGTAGGCTCCTTTTGGTTAATTCCGCTCTCACCGTTCATTTCCTCAAACGGATCC TCGAGACGCTGTTCGTTCACAAGTACAGCGGGAAGATGGCGGTGGAAACAGCGATTCCGATAAGCCTAAGCTATCTGATGATCGCAACAGTCACAATCTA CACCCAGCATCTAACCCAAGACGCTCTTCTCCCGGAACCATCTCTGGATTTGAAGCCTTTCGGAGCGTTACTTTTCTCAATCGGAATTGCTGGTAATTTC TACCACCATTACTTGCTCTCCAAGCTACGAACTAACAGCAACAACAAGGAGGAGAAGAACAAGAGTAAAGATCAGTACAAGATTCCAAAGGGAGGGATGT TCGACCTTGTGATCTGCCCTCATTACCTTTTCGAGATAATGGTGTTCTATGGCATCTCATTCATGTCTCAGACGCTGTATTCTTTCGCTGTCGCTATCGG AACAACTGCTTACTTGACTGGAAGGAGCTACGTTACCAGGAAATGGTACCTCTCGAAGTTTGATGATTTCCCTCCCTCTGTCAAGGCTCTTATCCCCTTC ATTTTCTAG
AA sequence Show only first row Show all	>Lus10008951 pacid=23175180 polypeptide=Lus10008951 locus=Lus10008951.g ID=Lus10008951.BGIv1.0 annot-version=v1.0 MMSSWITELIFFRPLPIVAVMSVVSAVSLANAGLSEVRGVHMKYSKFFSPGANTVVTNGNNAKETTTTTTAAAASISSRNGMLLAYTPAFVSAFSSLILL FINNNGGSGDVSSGFSRLLLVNSALTVHFLKRILETLFVHKYSGKMAVETAIPISLSYLMIATVTIYTQHLTQDALLPEPSLDLKPFGALLFSIGIAGNF YHHYLLSKLRTNSNNKEEKNKSKDQYKIPKGGMFDLVICPHYLFEIMVFYGISFMSQTLYSFAVAIGTTAYLTGRSYVTRKWYLSKFDDFPPSVKALIPF IF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Lus10008951 [exp]	0	1
AT3G47070			unknown protein		Lus10018216 [exp]	1.0	0.9636
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10017193 [exp]	1.7	0.9464
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10026238 [exp]	2.4	0.9472
AT1G22750			unknown protein		Lus10028718 [exp]	2.6	0.9257
AT4G14690		ELIP2	EARLY LIGHT-INDUCIBLE PROTEIN ...		Lus10039379 [exp]	2.8	0.9332
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006621 [exp]	3.3	0.9179
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10011777 [exp]	6.3	0.9301
AT3G01060			unknown protein		Lus10005219 [exp]	6.3	0.9244
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Lus10000906 [exp]	6.9	0.9088
AT3G47070			unknown protein		Lus10040689 [exp]	7.7	0.9204

Compare expression of checked genes

Lus10008951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.