Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04850 404 / 7e-145 VPS60.2 SNF7 family protein (.1.2) AT3G10640 400 / 3e-143 VPS60.1 SNF7 family protein (.1.2) AT4G29160 65 / 1e-12 SNF7.1 SNF7 family protein (.1.2.3) AT2G19830 57 / 1e-09 VPS32, SNF7.2 SNF7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028867 [exp] 467 / 8e-166 AT5G04850 399 / 7e-139 SNF7 family protein (.1.2) Lus10043454 [exp] 408 / 8e-146 AT5G04850 383 / 6e-136 SNF7 family protein (.1.2) Lus10034131 [exp] 403 / 9e-145 AT5G04850 374 / 3e-133 SNF7 family protein (.1.2) Lus10032705 [exp] 53 / 4e-08 AT2G19830 321 / 1e-112 SNF7 family protein (.1) Lus10012921 [exp] 50 / 3e-07 AT2G19830 318 / 1e-111 SNF7 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G242700 [exp] 423 / 2e-152 AT3G10640 405 / 1e-145 SNF7 family protein (.1.2) Potri.008G018300 [exp] 410 / 3e-147 AT3G10640 404 / 5e-145 SNF7 family protein (.1.2) Potri.018G069900 [exp] 47 / 3e-06 AT4G29160 222 / 1e-73 SNF7 family protein (.1.2.3) Potri.005G067700 [exp] 42 / 0.0001 AT5G09260 248 / 7e-84 vacuolar protein sorting-associated protein 20.2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [flax] [poplar] PspA PF03357 [flax] [poplar] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Lus10008953 pacid=23175127 polypeptide=Lus10008953 locus=Lus10008953.g ID=Lus10008953.BGIv1.0 annot-version=v1.0 ATGCAGAGGATATTCGGCTCCAAGAAGAACAAAGATCCTCCTCCTTCCATCTCCGATGCCTCCGATAAGATTAACAAAAGGGGAGATACTGTGGAAGAGA AGATAAAAAAGCTGGATGCTGAACTCAGCAGATACAAAGAACAGATTAAGAAAACACGGCCAGGGCCTGCTCAGGAAGCCATTAAAGCACGTGCAATGAG GGTTCTTAAGCAGAAGCGGATGTATGAGGGTCAGCGTGACATGCTCTACAACCAAACTTTTAACCTTGATCAAGTTGCTTTTGCTGCCGAGGGTATTAAA GATGCTCAACAAACTATGTCGGCTCTGAAGTCTGCCAACAAGGAGTTGAAAGGGATGATGAAAACTGTCAAGATCCAAGATATTGATAACTTGCAAGATG AAATGATGGACCTGATGGATGTTAGTAATGAAATCCAAGAGACCCTGGGTAGAAGCTATAATGTACCTGATGATATTGATGAAGATGAACTCATGGGCGA ACTTGATGCTTTGGAAGCGGACATGGGCTTCGAAACTGAAGCAGATGGGGTGCCATCGTATTTGCAACCTGACAAAGAACCAGATCTGGATGCGGAACTA AACATGCCTTCAGCGCCCATTGGACATGCTTCTAAACCCAATGCCCAGGGTGAGGATGAACTGTCTCTGCCCTCAGTTCCACGAGCAACGCTTCGTGGCT GA
AA sequence Show only first row Show all	>Lus10008953 pacid=23175127 polypeptide=Lus10008953 locus=Lus10008953.g ID=Lus10008953.BGIv1.0 annot-version=v1.0 MQRIFGSKKNKDPPPSISDASDKINKRGDTVEEKIKKLDAELSRYKEQIKKTRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFAAEGIK DAQQTMSALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEDELMGELDALEADMGFETEADGVPSYLQPDKEPDLDAEL NMPSAPIGHASKPNAQGEDELSLPSVPRATLRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10008953 [exp]	0	1
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10010063 [exp]	1.4	0.8964
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10004514 [exp]	2.4	0.8885
AT5G61310			Cytochrome c oxidase subunit V...		Lus10001454 [exp]	5.2	0.8227
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10032440 [exp]	5.9	0.8395
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10016143 [exp]	6.2	0.8594
AT3G10330			Cyclin-like family protein (.1...		Lus10031055 [exp]	7.2	0.7951
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10018442 [exp]	9.2	0.8423
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10034189 [exp]	10.2	0.8494
AT5G61310			Cytochrome c oxidase subunit V...		Lus10025028 [exp]	12.6	0.8080
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10023717 [exp]	13.4	0.8545

Compare expression of checked genes

Lus10008953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.