Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52060 370 / 7e-128 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G22070 343 / 6e-117 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25330 260 / 4e-84 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G32290 258 / 2e-83 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 157 / 1e-44 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G31350 157 / 2e-44 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G25970 151 / 5e-42 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 147 / 8e-41 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 147 / 2e-40 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G25870 146 / 4e-40 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028866 [exp] 662 / 0 AT3G52060 393 / 1e-136 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10004106 [exp] 339 / 1e-114 AT5G22070 486 / 3e-172 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001503 [exp] 244 / 3e-78 AT4G32290 382 / 7e-132 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002919 [exp] 244 / 6e-78 AT5G25330 389 / 4e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 147 / 1e-40 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10009738 [exp] 147 / 2e-40 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 147 / 2e-40 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10026959 [exp] 146 / 6e-40 AT4G31350 490 / 8e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10005505 [exp] 146 / 6e-40 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G018600 [exp] 456 / 2e-161 AT3G52060 407 / 2e-142 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.010G242900 [exp] 436 / 1e-153 AT3G52060 407 / 9e-143 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G215400 [exp] 354 / 2e-120 AT5G22070 421 / 1e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.009G017300 [exp] 319 / 4e-107 AT5G22070 418 / 7e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 151 / 3e-42 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 150 / 1e-41 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 147 / 8e-41 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 146 / 4e-40 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G254800 [exp] 140 / 4e-39 AT4G32290 210 / 1e-65 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 142 / 9e-39 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10008954 pacid=23175159 polypeptide=Lus10008954 locus=Lus10008954.g ID=Lus10008954.BGIv1.0 annot-version=v1.0 ATGTCGTCATACTCTCCAGTTATCTATTTCTTCTCCCTTTTCCTCTCCCTCGCTCTAATCTACACCATCGCCCCTCAAATACTCCCATCCCAAAACCCCT TCTTCCACCCTCACGACGATCTCGACGACCTAGCACTCTTCAACAAGGCCCTCCGCTCTGTCTCCGGCCATAAAAACAACCACCACCACCACAACCACAA CAACAACCGCCGCAGCAACCTCCGAATCTCCCGCCTCGCCACCAAAAACCCTACCCCCAAAATCGCCTTCCTCTTCCTAACCAACTCTAACCTCACCTTC GCACCTCTCTGGGACCGCTTCTTCCGCGGCCACTCCCGCTACTACAACGTCTATGTCCACGCCGATCCTTCCGCCGCCGTCCGGATTCCGAGCGGCGGAG CCTTCCAATCGAGTCTGATCCCTAGTAAGAAGACTGCGAGGGCCTCGCCTACTTTAATCGCCGCCGAGAGGCGCCTCCTCGCCCGTGCGATTCTCGATGA TCCATTGAATCTCTACTTCGCGCTAGTCTCTCAGCACTGTATCCCTATCCACTCGTTCCCTTTCCTCTACCGCTCGCTTTTGGGGGATAATCCGTTGAGA GCTTTTACCTCTCAGTCTCGTCACCGGAGCTTCATCGAGATCTTGTCTGAAGATCCTAATCTGCCGGAGAGGTACGTCGCTAGGGGAGAGAACGTGATGA TGCCGGAGGTCCCGTTTGAGGAATTCCGGGTTGGGTCGCAGTTCTTCGTGCTCGCTAAGCGGCACGCTGTGACTGTGTTGTCTGATAAGAAGCTGTGGAG GAAGTTTCGGTTGAAGTGTCTTAATCTGGACTCGTGCTACCCTGAGGAGCACTATTTCCCGACTCTTCTTTCCATGGAGGATCCGAGAGGGTGCAGTGGT TTCACTTTGACGAATGTGAACTGGACTGACAGCTTCGACGGCCACCCGCGGACCTACGAAGCGCCGGAGATATCTGCCAGCCTCGTGCAGAGGTTGCGGC AGTCCAATTCCAGCTACCCGTACTTTTTCGCCAGGAAATTCTCGCCGGATTGCTTGCCGCCGTTGATGGAGATGGCCGATGACGTTATTTTCCGGGACTG A
AA sequence Show only first row Show all	>Lus10008954 pacid=23175159 polypeptide=Lus10008954 locus=Lus10008954.g ID=Lus10008954.BGIv1.0 annot-version=v1.0 MSSYSPVIYFFSLFLSLALIYTIAPQILPSQNPFFHPHDDLDDLALFNKALRSVSGHKNNHHHHNHNNNRRSNLRISRLATKNPTPKIAFLFLTNSNLTF APLWDRFFRGHSRYYNVYVHADPSAAVRIPSGGAFQSSLIPSKKTARASPTLIAAERRLLARAILDDPLNLYFALVSQHCIPIHSFPFLYRSLLGDNPLR AFTSQSRHRSFIEILSEDPNLPERYVARGENVMMPEVPFEEFRVGSQFFVLAKRHAVTVLSDKKLWRKFRLKCLNLDSCYPEEHYFPTLLSMEDPRGCSG FTLTNVNWTDSFDGHPRTYEAPEISASLVQRLRQSNSSYPYFFARKFSPDCLPPLMEMADDVIFRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	0	1
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024586 [exp]	1.4	0.9434
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024585 [exp]	2.0	0.9347
AT2G45040			Matrixin family protein (.1)		Lus10028180 [exp]	2.0	0.9234
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10003461 [exp]	2.4	0.9313
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10028866 [exp]	3.5	0.9141
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10007646 [exp]	3.9	0.9199
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10033697 [exp]	4.5	0.9088
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10018250 [exp]	4.6	0.9124
AT3G44610			Protein kinase superfamily pro...		Lus10043435 [exp]	4.9	0.9062
AT5G53730			Late embryogenesis abundant (L...		Lus10032932 [exp]	5.7	0.9101

Compare expression of checked genes

Lus10008954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.