Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65550 177 / 4e-50 UDP-Glycosyltransferase superfamily protein (.1) AT5G49690 175 / 2e-49 UDP-Glycosyltransferase superfamily protein (.1) AT5G12890 159 / 3e-43 UDP-Glycosyltransferase superfamily protein (.1) AT4G34131 158 / 4e-43 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34138 158 / 5e-43 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT2G22590 156 / 3e-42 UDP-Glycosyltransferase superfamily protein (.1) AT4G34135 154 / 3e-41 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT2G15480 153 / 5e-41 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT1G73880 149 / 1e-39 UGT89B1 UDP-glucosyl transferase 89B1 (.1) AT2G36800 149 / 2e-39 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028865 [exp] 730 / 0 AT5G49690 191 / 1e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10028863 [exp] 603 / 0 AT5G65550 183 / 1e-52 UDP-Glycosyltransferase superfamily protein (.1) Lus10008956 [exp] 591 / 0 AT5G65550 189 / 1e-54 UDP-Glycosyltransferase superfamily protein (.1) Lus10028864 [exp] 456 / 8e-160 AT5G65550 154 / 1e-42 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 345 / 2e-114 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10006280 [exp] 301 / 2e-97 AT5G65550 179 / 6e-51 UDP-Glycosyltransferase superfamily protein (.1) Lus10014084 [exp] 186 / 4e-53 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10003154 [exp] 181 / 2e-51 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10019831 [exp] 181 / 3e-51 AT2G15490 425 / 8e-146 UDP-glycosyltransferase 73B4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024900 [exp] 386 / 4e-131 AT5G65550 173 / 7e-49 UDP-Glycosyltransferase superfamily protein (.1) Potri.008G024801 [exp] 184 / 1e-54 AT5G65550 63 / 3e-11 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 184 / 2e-52 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G098400 [exp] 174 / 7e-49 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.010G182575 [exp] 174 / 9e-49 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 173 / 1e-48 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 173 / 1e-48 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G303700 [exp] 172 / 6e-48 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303300 [exp] 170 / 2e-47 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G030600 [exp] 169 / 5e-47 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10008955 pacid=23175110 polypeptide=Lus10008955 locus=Lus10008955.g ID=Lus10008955.BGIv1.0 annot-version=v1.0 ATGGAGGATCAGCTCCAGCTCTACATAACAGTGATGGACGAGGACTCTGCACAAACACCAATCCACAACTCCAAATCGATGGTGGACGAAGCCACAAACT CCGGCGAAATCCGGATCCTTATGTTCCCATGGCTAGCTCACGGCCATATTTCCCCGTTCCTCGAACTCGCCAACAAGCTAGTCTCCCGCCTGCCAAACGT GCAAGTCCACCTCTGCTCTTCTCCGATCAATCTCGCGTCGATCACCAAACTCATCAAACACCCTTCACGAATCAAGCTCATAGAGCTCAATCTCCCTTCT TTACCAGACCTCCCACCTCACTCCCACACCACCAAAGACCTCCCAACCCACCTCCTCCTAACCCTCATGAAAGCCCTAGACATGGCCAGCTCCGATTTCT CCCAGATCCTGACGACATTATCCCCAGACCTCCTCATCTGTGACTTTTTCCAGCCATGGGCATCAAAACTCGCATTCTCGCTTCTTAAGATCCCCACGGT GTTGTTCATGACCATTGCTGCCATCTCTACTGTTGTCCCGTTTACTTCCATGAAAAGCTCCGGCAAATTCGACTGCCTTTTCCCTCTCCGGTCAAATTAC TTCTTTGATTACGAGCAGGTGGAGTCTCCAAGCATCATGGACCGCGTGTTTCAGTCTTGGGAGAGATCCGCTGGGATTTTACTCGTGAAGAGTTTCAGAG AGATCGAAGCGGAGTACATTCAAAGGCTGTCGGAGTTGGTCGGGAAATCAGTCCTCCCAGTTGGCCCGCTCGTTCCCGGCGATGACGATGAAAATCAACA ACCTGACAACGACATCATCAATTGGCTGAACAACAAAGCTCCATCCTCCGTTGTCTACATCTCATTCGGCAGCGAATCATACCTATCGAGACGTCAGATC GAAGAACTAGCCCACGCACTTGTAATCCTAATTGAGAAAGCGATACCGATCAATTTCGTATGGGTGCTGAGGTTTCCTCAAGGAGAAGAGGTGGCGATAT CGGAGGCACTGCCGGAAGGGTTTTCTGCGGCAGTGGGAGAAAGGGGGTACGTGACAGAGGATTGGGCACCGCAGAGGAGGATATTGAGACACGAGAGCGT GGGAGGGTTCGTGAGCCACTGCGGATGGAGCTCGGTGATGGAAGGGATGAAGTACGGAGTGCCGATGGTGGCAATGCCACTACAGAATGATCAGTCGACG AATGCGAGTCTGGTGGAGGAAGCCGGGGTGGGATTGAAGGTCGGGGAGATTGAGAGGGGAGAATTGGCGAAGGTGATTGAAGAAGTTATGATCGGGAGTA ATAACATTATTAAGGATAAAGCTAAGGAGATTAAGCATTGTTTGCTGGAGAAAGGAGATCGTGACATTGATGAAGCCATTGATCGTCTGGTTCATCTTTG TAAGACGTTTGCGGAATAA
AA sequence Show only first row Show all	>Lus10008955 pacid=23175110 polypeptide=Lus10008955 locus=Lus10008955.g ID=Lus10008955.BGIv1.0 annot-version=v1.0 MEDQLQLYITVMDEDSAQTPIHNSKSMVDEATNSGEIRILMFPWLAHGHISPFLELANKLVSRLPNVQVHLCSSPINLASITKLIKHPSRIKLIELNLPS LPDLPPHSHTTKDLPTHLLLTLMKALDMASSDFSQILTTLSPDLLICDFFQPWASKLAFSLLKIPTVLFMTIAAISTVVPFTSMKSSGKFDCLFPLRSNY FFDYEQVESPSIMDRVFQSWERSAGILLVKSFREIEAEYIQRLSELVGKSVLPVGPLVPGDDDENQQPDNDIINWLNNKAPSSVVYISFGSESYLSRRQI EELAHALVILIEKAIPINFVWVLRFPQGEEVAISEALPEGFSAAVGERGYVTEDWAPQRRILRHESVGGFVSHCGWSSVMEGMKYGVPMVAMPLQNDQST NASLVEEAGVGLKVGEIERGELAKVIEEVMIGSNNIIKDKAKEIKHCLLEKGDRDIDEAIDRLVHLCKTFAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49690			UDP-Glycosyltransferase superf...		Lus10008955 [exp]	0	1
AT4G03230			S-locus lectin protein kinase ...		Lus10031592 [exp]	2.4	0.9034
					Lus10022598 [exp]	2.6	0.9068
AT3G01570			Oleosin family protein (.1)		Lus10014559 [exp]	3.5	0.8811
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006012 [exp]	5.7	0.8579
AT1G71040		LPR2	Low Phosphate Root2, Cupredoxi...		Lus10032443 [exp]	6.7	0.8913
AT1G64160			Disease resistance-responsive ...		Lus10017539 [exp]	6.9	0.8728
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042433 [exp]	8.1	0.8611
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031350 [exp]	8.5	0.8868
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10019774 [exp]	8.7	0.8839
AT3G15090			GroES-like zinc-binding alcoho...		Lus10013104 [exp]	10.0	0.8308

Compare expression of checked genes

Lus10008955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.