Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65550 170 / 2e-47 UDP-Glycosyltransferase superfamily protein (.1) AT5G49690 145 / 1e-38 UDP-Glycosyltransferase superfamily protein (.1) AT2G15480 145 / 3e-38 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT4G34131 143 / 9e-38 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34138 143 / 2e-37 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT2G15490 139 / 3e-36 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT4G27570 135 / 7e-35 UDP-Glycosyltransferase superfamily protein (.1) AT2G23260 132 / 7e-34 UGT84B1 UDP-glucosyl transferase 84B1 (.1) AT4G27560 132 / 7e-34 UDP-Glycosyltransferase superfamily protein (.1) AT5G03490 131 / 1e-33 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028863 [exp] 732 / 0 AT5G65550 183 / 1e-52 UDP-Glycosyltransferase superfamily protein (.1) Lus10028865 [exp] 614 / 0 AT5G49690 191 / 1e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10008955 [exp] 574 / 0 AT5G49690 190 / 4e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10028864 [exp] 573 / 0 AT5G65550 154 / 1e-42 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 338 / 1e-111 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10006280 [exp] 296 / 2e-95 AT5G65550 179 / 6e-51 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 159 / 2e-43 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 157 / 1e-42 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10014084 [exp] 155 / 5e-42 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024900 [exp] 374 / 2e-126 AT5G65550 173 / 7e-49 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 167 / 2e-46 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G098400 [exp] 166 / 4e-46 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.003G184400 [exp] 159 / 2e-43 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.008G024801 [exp] 150 / 4e-42 AT5G65550 63 / 3e-11 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G210400 [exp] 154 / 2e-41 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 153 / 3e-41 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 153 / 4e-41 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G302400 [exp] 152 / 9e-41 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.017G042800 [exp] 150 / 2e-40 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10008956 pacid=23175134 polypeptide=Lus10008956 locus=Lus10008956.g ID=Lus10008956.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAAGCCACAAACTCCGGCGACGCATTCAGGATCCTGATGTTCCCATGGCTAGCTCACGGCCACATCTCCCCGTTCCTCGAGCTCGCCAACA AGCTCGTCTCCCGCCGTCCAAACTTCCACGTCTACCTCTGCTCTTCTCCGATCAATCTCCAGTCAACCACCAAACTCATCAAACACCCATCCCGAATCGA TCTCATAGAGCTCCATCTGCCTTCTTTACCTGACCTCCCACCTCACTCCCACGCCACTAAAGGCCTCCCAACCCACCTCATCCCAACCCTGCTCAAAGCT CTGGATATGGCAGGCTCTGAATTCTCCCAAATCTTGACCAAACTGTCTCCGGATTTGCTCATATCCGACTTCCTCCAGCCATGGGCACCTAAACTCGCCT TATCCCTCCTCAAAATCCCCACCGTCTGTTTCATGACTGCCCCTGCCATCGTCTACGATTTCGGATTTACTTCCATGAACGCCTCCGGACAATTCAACGG CCATTTCCCTATGCGGTCCAATCACGTCGTCGACTACGGGGCAGCTGAGTCTACTCCTAGCCTCACCGATCGCTTTATGAGGTCCATGGAGAGATCTTCT ACCGTGGTACTGATCAAGAGCTTCAGAGACATCGAAGCACATTACATCGACAGGGTGTCCAAATTCATCGGCAAGTCAATGGTCACGATTGCCCCACTCG TTCCCGACGACGACGACGGAGAGGGAGATCAAGAACCAGATAATAACGAAATCATCAATTGGCTAAACAAGAAACACAAATCCTCTGTAGTATACATCTC ATTTGGAAGTGAATGTTACCTATCAGCTTCTCAAATCCAGGAATTGGCTCACGCGCTTCTGATTCTTCTGGTTGAAAAAGCATGCCCTGTCAATTTCATA TGGGTACTGAGGTTTCCTCGCGGGGAAGAGGTGGAGATATCGGAGGCGCTACCGGAAGGGTTTATCGATGAGATGGTGGGGCCGGACAATAAGGTATATC TGGTGGAGGGTTGGGCACCGCAACGGAGGATTTTGAGGCACGGGAGCGTTGGAGGATTTGTGAGCCACTGCGGATGGAGCTCGGTGATGGAAGCGATGAA GTACGGAGTTCCGATCATCGGGGTGCCACTGCGTATGGATCAGCCAATGAATGCGAGGCTGGTGGAAGAAATTGGAGTTGGTTTGAAGGTTGAGAAGATC GAGAGGGGAGAACTGGCGAAGGTGATCGAGGAAGTTGTGGTCGGAGAAAGGAATGTTGAGTTTAGGGATAAGGCTACGGAGATTCAGAATTGCTTGCTGG AGAAAGGTGATAGTGACATTGATGAAGCCATTGAACGTCTGGTTCATCTTTGTAGCAACTTTTCGGTTTAG
AA sequence Show only first row Show all	>Lus10008956 pacid=23175134 polypeptide=Lus10008956 locus=Lus10008956.g ID=Lus10008956.BGIv1.0 annot-version=v1.0 MEEEATNSGDAFRILMFPWLAHGHISPFLELANKLVSRRPNFHVYLCSSPINLQSTTKLIKHPSRIDLIELHLPSLPDLPPHSHATKGLPTHLIPTLLKA LDMAGSEFSQILTKLSPDLLISDFLQPWAPKLALSLLKIPTVCFMTAPAIVYDFGFTSMNASGQFNGHFPMRSNHVVDYGAAESTPSLTDRFMRSMERSS TVVLIKSFRDIEAHYIDRVSKFIGKSMVTIAPLVPDDDDGEGDQEPDNNEIINWLNKKHKSSVVYISFGSECYLSASQIQELAHALLILLVEKACPVNFI WVLRFPRGEEVEISEALPEGFIDEMVGPDNKVYLVEGWAPQRRILRHGSVGGFVSHCGWSSVMEAMKYGVPIIGVPLRMDQPMNARLVEEIGVGLKVEKI ERGELAKVIEEVVVGERNVEFRDKATEIQNCLLEKGDSDIDEAIERLVHLCSNFSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65550			UDP-Glycosyltransferase superf...		Lus10008956 [exp]	0	1
AT1G66930			Protein kinase superfamily pro...		Lus10008362 [exp]	1.0	0.9370
					Lus10025700 [exp]	1.4	0.9016
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10020877 [exp]	2.0	0.8905
AT2G41200			unknown protein		Lus10008568 [exp]	3.9	0.8974
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10025128 [exp]	4.6	0.8613
AT2G33050		AtRLP26	receptor like protein 26 (.1)		Lus10019693 [exp]	4.9	0.8680
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10010960 [exp]	5.5	0.8864
AT1G70250			receptor serine/threonine kina...		Lus10008361 [exp]	7.1	0.8344
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10030219 [exp]	8.6	0.8104
AT2G34960		CAT5	cationic amino acid transporte...		Lus10018691 [exp]	9.8	0.8158

Compare expression of checked genes

Lus10008956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.