Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10650 254 / 7e-69 AtNUP1 unknown protein AT5G20200 80 / 9e-15 nucleoporin-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028861 [exp] 1573 / 0 AT3G10650 436 / 2e-131 unknown protein Lus10034137 [exp] 628 / 0 AT3G10650 323 / 2e-92 unknown protein Lus10043447 [exp] 620 / 0 AT3G10650 320 / 4e-90 unknown protein Lus10043265 [exp] 57 / 9e-08 AT5G20200 290 / 8e-87 nucleoporin-related (.1) Lus10019408 [exp] 52 / 4e-06 AT5G20200 273 / 2e-80 nucleoporin-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G014800 [exp] 388 / 5e-114 AT3G10650 379 / 1e-110 unknown protein Potri.010G244700 [exp] 377 / 2e-110 AT3G10650 353 / 8e-102 unknown protein Potri.008G015350 [exp] 99 / 3e-22 AT3G10650 77 / 2e-15 unknown protein Potri.018G006200 [exp] 62 / 2e-09 AT4G31430 148 / 4e-38 unknown protein Potri.018G129900 [exp] 60 / 1e-08 AT5G20200 317 / 1e-96 nucleoporin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008959 pacid=23175170 polypeptide=Lus10008959 locus=Lus10008959.g ID=Lus10008959.BGIv1.0 annot-version=v1.0 ATGGGAAAAATAGCCAGCCCTACGAGGATGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGACACCCTGCCCCCCAGACAGCAAACGGCAGCCGTAGCGGTTGGTTCTCGAAACTGGTCGA TCCGGCGCAGAAGCTCATCTCCTCTGGTGCTCAAAGATTTTTTGCATCTGTCTTCCGCAAGCGCCTTGCCCCTCCTCCACCGACGCGGCCGCAGGAAGCA GAAGCAGAGCAGGGAACAAAGGACAAAGAAGTCAAAACGACTATCAAGGACAAGCAAGTCATAACAATTCCCAAGGATAAACAAGTTGAAACATTTCCCA TGCTTTCCTCCAAGGTTCACGGAGACTCTCGGGGAGAAACTAGCCACGTGTATGATGGCCCAAGTAGCTCAAATGGAGGCGGGGCTACTGATTTGGAGTC GATGTTGAAGCATAAAAGTTTTACCAGGCATGAGATTGATAGATTGACTGCTCTATTGCAGTCAAGAATGGTTGATTCACCTCCAGAAACTGGAAAGAAT GCTGAAGTTGCTCCATCAAATTTATTTCTGCTGGGGGACAAGGATGAACTGGCCATCACTCCGGTTAAAAATCGTGGGACTATGAACAACTTATTCTCAA CCCCTGTTGTACTTGATCAAGATGTTACTTCACCAGCGGAGCTTGCAAAAGCTTACATGGGCAGTAGACCTTCCAAGGTATCTCCATCAATGTTAGGTTT CCCCAGTCAACCATGGAAGGAAGATTCAGCTCCGCAGTTAAGTCCAAACTTTGTTTCGAAAGGGCCGACTCCATCCGCCATTTACAGGTCTTCCAGTCAA GCTGGATTGACAGATAATGGATTCATGACACCAAATTCACGTGGTAGATCTGCTGTTTACAGCATGGCTAGAACTCCATATTCCAGAACCCAGTCAACTA AAATGATTCAGGCCATAGGTACCTCAAGTAATGCTTGGGGTGGGCAAGATTCTTCTTCTCTTAGTGCTGTGGAGAATGGCAGAGTTTATGGATCGAAACA AGGGACTTTGAAGAGAAGGAGTTCTGTACTGGACAACGATATAGGATCTACTGGTCCTATTCGCAGGATTCGCCAAAAATCAAATCTAATGCCTACTGGA GCTCTCTCCGCCCGTGGAACTCGTTTCACTTCGAATGCAGAGAGACAGCTATCCTTGACCTCAAAGCCTGCTCTAGACAATAAACCTTCCAAGGAAAATA CCGACTATAACATTCATAATTCAGGATTTGCCCCCATCTCTTCTCAATCCAGTGAGATGGCTTCAAAGATACTCAAGCAGCTAGATGTGTTGGTCTCATC TAGGGAAAAGTCCCCTAGTAAATTATCCCCATCGAAGTTACGTGGACAAGCTCTTAGAAGCCTAGAGAAAATAGATTCTTCGAAATTTTTGGAGAGTTTT CAGAATCCGGGGATGGATGCTCCAAATGCTGGTATGTTAGATGATTCTCAACACTGTATGCCTCGAAATGAGGACATGAGTGAACAAATTGGTCCGGGCA AAGTAAACTATCTTAGTAGCAAGTTGGGTACTGGAAAAACTGTAGAGACACCTACTTCAGCTGGTGATGGAGCAGCTAAAGGAGTTGATTCTACCATCAA GCCCCCTCAAGCGAGAAAACCAGGATTTCGTATAAGTGCAGATGAGGATTTCCGGGAGATGGATGACGATGACGGTGTCAGGAAAAATGCTACCGGTGAC ATGGACAATATGAAGTTCATCTCTAGTTCTTCTAATGGTAAAGCTGCTGAAACTGTTACGACGGGAAACCCTTCAGTTCTTTATGAAGCGACTCCCCAGA CAAATTCTACACTAATCAAGAATGATGATTCGACAATCCTTGGAAATAGCAATACTTTTGCAGTTGGTGCAGCTTCATCCATGGGGATTGTGAAGCATGC TGCCTCCTTAAGTCAATCAGCTGCAGCTTCTGATAAGACTGACGGCAGAGTATCCAGGGAGAAGGTTGCTTTTCAAATTGGGCTTAATGTTGCCCATGAG AGAACTCCTGTGTTTTCGTCTTCATCTCCGAAAGCCGCAAATGATGGATTTGGTGCTTCATCAAACTCCCAATCAGAAAGCTTAGAGAGGACTGTTACTG CTGCTTCCACAATAGTTGATCCTGTGGCAAAACAACCTGAAGCTGATAAAGATGTTGAGAGAAACAAATCTAGCCTCTCCTTCCTGAATAATAAGGAAAC TGTACCTGCATCTTTGTTGGCCTCATCACCTGCTGGAGGCATATTCTCATTTGGGTCCAGTCTACAAAATGGAACTCTTCCAGGGTCAGCAACTGCTCAA ACTGTATCCAACAGTTCCGTCTCGGTTGTTCCTAGTGGCACCATTGGCGCAGACATCTCTGCGAATGCGGCAAAAACTGATAGTAAAGGCGATTTTAAAT CAGCTTTAGCACCTCCCGCGAGTTCATCCATTTTCAAATTTGGGTCATCTCCTACTTCAGGTTCAGTTTCTTTGGCTTCAACAAATGCTGGTAGTGTTAT CAGCCAAAAAAAAGCAGACACTAGCTTTGGAAGTTTTATCAGTGCTGCCTCCGGTGATTCCAAACCTGCAGTCACAATTGCTGAGAACAGTACAGCCAGC CCCTCAGGTGATATTTCATCTACGGAAAAGGGAAGTGCCTTAATTGGTGGTACTGGTTTTTCAAGTACAAGCGCTGGAAACAGTCTTTTTGGTGGTAAAC CTACTTCTGGTACAATCACCAGCAGTAACCCTTTTGGTGCTTCTAGCTCTGCTGGTACGAGCACTGGAAGTGGTCTCTTTAGTACTACTGGTGGTTCAAG CAGTGGACACAGCCTCTTCAGCGCAACAGCTCCAAGTACGACTATCGGGAGTAGTCCTTTTAGTTTCAGTGCTAAATCAGTACCGTCAGGTGTGAGCAAT CAGTCTCAGAATATGAATAATACTCTAGGCAGCACCCACGTAGCTGCAACTGGCTCTGCCTTGTCAAACCCGAGTACCACTATGTTCAGTTCTACTCTGC CGTCTCCTTTTCAGTTGTCAAACTCGTCTGCTGCTGCTCCCGGCAATTCACTTTTCAGCTCATCTTCTGCTTCTAATTTGTTCAGTTCTGGTCCTTCTTT TGGAGCAACACCTTCCGGCCCAGCTTCAGAACCAAACTCGGTTAGCTCAAGTGCTAGCACATCATCTCCAATATTTAGTACAAGCTGGTCAACACCTACA CCATCCGTGTTTAGTACTATGCCCAACTCCACAGCTTCGTCAAGTGGGTTTGTCTTCGGAGCGTCATCAAGTGCAGTTACTGCAGGCACCTCCGTCTTTG GATCTTCTACATCCAGTTCCCCATTCTCCTTCAGTGCACCTGCAGCAAATCCTCCTGCTCAATCTGTGTTTGGTGGCCCTAGTACATCTTTTGCGTTCAA TTCGACTCCATCTTTTGGCTCGACACCGTCAGGTAGCAATGATCAAATGAGCATGGAGGACAGCATGGCAGAAGACACAGTTCAGGCAACCACACATTCT GTTCCCTTCTTCAGTCAGCCAACATCTGCACCCCCTTCCTCTGGCTTTGTATTCGGTTCGGAATGCAGCTCCATAACTCCGGCAAATGCTCAGTTTGGTG CAGCATCACCATTCCAATTTGGCGGCCAGCAAAGTATGCCGGCAGCTCATCAACAAAATGCTTCACCATTTCAAGCCAGCGGGAGCCTGGAGTTCAACGC AGGAGGCAGCTTTTCATTAGGGACAGGTGGTGATAAAAGTAACAGAAGAATCATTAAAGTGAAGAAAAGCAACCGGAAGAGGTGA
AA sequence Show only first row Show all	>Lus10008959 pacid=23175170 polypeptide=Lus10008959 locus=Lus10008959.g ID=Lus10008959.BGIv1.0 annot-version=v1.0 MGKIASPTRMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHPAPQTANGSRSGWFSKLVDPAQKLISSGAQRFFASVFRKRLAPPPPTRPQEA EAEQGTKDKEVKTTIKDKQVITIPKDKQVETFPMLSSKVHGDSRGETSHVYDGPSSSNGGGATDLESMLKHKSFTRHEIDRLTALLQSRMVDSPPETGKN AEVAPSNLFLLGDKDELAITPVKNRGTMNNLFSTPVVLDQDVTSPAELAKAYMGSRPSKVSPSMLGFPSQPWKEDSAPQLSPNFVSKGPTPSAIYRSSSQ AGLTDNGFMTPNSRGRSAVYSMARTPYSRTQSTKMIQAIGTSSNAWGGQDSSSLSAVENGRVYGSKQGTLKRRSSVLDNDIGSTGPIRRIRQKSNLMPTG ALSARGTRFTSNAERQLSLTSKPALDNKPSKENTDYNIHNSGFAPISSQSSEMASKILKQLDVLVSSREKSPSKLSPSKLRGQALRSLEKIDSSKFLESF QNPGMDAPNAGMLDDSQHCMPRNEDMSEQIGPGKVNYLSSKLGTGKTVETPTSAGDGAAKGVDSTIKPPQARKPGFRISADEDFREMDDDDGVRKNATGD MDNMKFISSSSNGKAAETVTTGNPSVLYEATPQTNSTLIKNDDSTILGNSNTFAVGAASSMGIVKHAASLSQSAAASDKTDGRVSREKVAFQIGLNVAHE RTPVFSSSSPKAANDGFGASSNSQSESLERTVTAASTIVDPVAKQPEADKDVERNKSSLSFLNNKETVPASLLASSPAGGIFSFGSSLQNGTLPGSATAQ TVSNSSVSVVPSGTIGADISANAAKTDSKGDFKSALAPPASSSIFKFGSSPTSGSVSLASTNAGSVISQKKADTSFGSFISAASGDSKPAVTIAENSTAS PSGDISSTEKGSALIGGTGFSSTSAGNSLFGGKPTSGTITSSNPFGASSSAGTSTGSGLFSTTGGSSSGHSLFSATAPSTTIGSSPFSFSAKSVPSGVSN QSQNMNNTLGSTHVAATGSALSNPSTTMFSSTLPSPFQLSNSSAAAPGNSLFSSSSASNLFSSGPSFGATPSGPASEPNSVSSSASTSSPIFSTSWSTPT PSVFSTMPNSTASSSGFVFGASSSAVTAGTSVFGSSTSSSPFSFSAPAANPPAQSVFGGPSTSFAFNSTPSFGSTPSGSNDQMSMEDSMAEDTVQATTHS VPFFSQPTSAPPSSGFVFGSECSSITPANAQFGAASPFQFGGQQSMPAAHQQNASPFQASGSLEFNAGGSFSLGTGGDKSNRRIIKVKKSNRKR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10650		AtNUP1	unknown protein		Lus10008959 [exp]	0	1
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Lus10032431 [exp]	1.0	0.9380
AT3G56870			unknown protein		Lus10018851 [exp]	1.4	0.9281
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Lus10017099 [exp]	3.5	0.8815
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	4.9	0.8751
AT5G58410			HEAT/U-box domain-containing p...		Lus10042236 [exp]	5.5	0.8626
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	7.1	0.8967
AT3G26990			ENTH/VHS family protein (.1)		Lus10005665 [exp]	7.1	0.8548
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	8.4	0.8814
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014271 [exp]	8.5	0.8710
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10021457 [exp]	8.8	0.8744

Compare expression of checked genes

Lus10008959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.