Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36290 354 / 4e-122 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 334 / 1e-114 alpha/beta-Hydrolases superfamily protein (.1) AT3G48410 335 / 2e-114 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 320 / 8e-109 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 310 / 9e-105 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 306 / 2e-103 alpha/beta-Hydrolases superfamily protein (.1) AT5G22460 288 / 3e-96 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03240 217 / 8e-69 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 213 / 4e-67 alpha/beta-Hydrolases superfamily protein (.1) AT3G44510 207 / 7e-65 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028860 [exp] 545 / 0 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10034135 [exp] 379 / 4e-132 AT3G48410 396 / 9e-138 alpha/beta-Hydrolases superfamily protein (.1) Lus10043449 [exp] 374 / 3e-130 AT3G48410 395 / 2e-137 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 373 / 5e-128 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10008968 [exp] 363 / 1e-125 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 362 / 3e-125 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 360 / 2e-124 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 358 / 3e-123 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10021371 [exp] 351 / 3e-120 AT3G48410 473 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237700 [exp] 399 / 5e-140 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 391 / 9e-137 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 365 / 1e-126 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 365 / 1e-126 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 366 / 2e-126 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G203700 [exp] 306 / 9e-104 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164900 [exp] 306 / 2e-103 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164600 [exp] 247 / 2e-80 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G131300 [exp] 130 / 5e-34 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 123 / 2e-31 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10008960 pacid=23175157 polypeptide=Lus10008960 locus=Lus10008960.g ID=Lus10008960.BGIv1.0 annot-version=v1.0 ATGAGGGTCAATAGCAGTACTGTGTGGATGTATCAAGTCACTTACCCGCCACCCCCCAAAATCTGCGGTAGCCGAAATGGTCCGCCGGTCACAGCTCCAA GAATCAAGCTTAGAGATGGCAGACATTTAGCCTACAAGGAAAATGGTGTACCAAGAGATGCAGCCAGATTCAAGCTCATATTCATCCATGGCTTCTTCTC TTGCCGCCACGACCCTGTCATTACTTTCCCTCCTGAAGTTTACCAACAGCTACAAGTGAACATTGCCTCGTTTGACAGACTGGGTTACAGAGAGAGCGAT CCGGACCCTAACCGTAACCCCAAGAGCTTGGCTTTGGATGTGGAAGAGCTTGCAGATCAGTTGGGACTTGGTCACAAATTCTATGTGGTTGGGTTCTCCA TGGGTGGTCAAGCTGTTTGGGGCTGCCTCAACTACATCCCTCACAGGGTAGCAGGAGCCACACTAATAGCTCCGGCGGTGAACTACTGGTGGCCGGGGTT TCCAGCCAACTTATCAACACAAGCATATAAGTTGCAGCTACCTAGAGATCAAGGGACACTCAGGGACCTGCAGATACGGTCCCATACGAAACAGCTAACC GACGAGGTGAATGTGTACGTAATACAGCAAGGGAAGTATGAAGCATTGCATAGGGACATGATGGTAGGATTGGGGAGCTGGGAATTCGACCCCATGGACA TTCAGAATCCGTTCCCGGAGAGTGAAGGTTCGGTTCAGCTGTGGCAAGGCGACGAGGACAGAATGGTACCGGTGATATTGCAGCGTTACATCGCCGAGAA GCTGCCGTGGATTACTTACCGTGAATTGGCCGGCGCCGGACATCTGTTCCCATTTATCCCAGAACAAACTCAGGCCATTCTGACGGCTTTGTTATCACCG TTATCATCGTCTGAGGATTGA
AA sequence Show only first row Show all	>Lus10008960 pacid=23175157 polypeptide=Lus10008960 locus=Lus10008960.g ID=Lus10008960.BGIv1.0 annot-version=v1.0 MRVNSSTVWMYQVTYPPPPKICGSRNGPPVTAPRIKLRDGRHLAYKENGVPRDAARFKLIFIHGFFSCRHDPVITFPPEVYQQLQVNIASFDRLGYRESD PDPNRNPKSLALDVEELADQLGLGHKFYVVGFSMGGQAVWGCLNYIPHRVAGATLIAPAVNYWWPGFPANLSTQAYKLQLPRDQGTLRDLQIRSHTKQLT DEVNVYVIQQGKYEALHRDMMVGLGSWEFDPMDIQNPFPESEGSVQLWQGDEDRMVPVILQRYIAEKLPWITYRELAGAGHLFPFIPEQTQAILTALLSP LSSSED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10008960 [exp]	0	1
AT5G59340	HD	WOX2	WUSCHEL related homeobox 2 (.1...		Lus10016569 [exp]	2.8	0.8593
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10041082 [exp]	4.5	0.7414
AT4G03220			Protein with RNI-like/FBD-like...		Lus10027258 [exp]	17.6	0.6629
					Lus10039495 [exp]	25.7	0.6367
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10037728 [exp]	26.0	0.6489
AT2G34740			Protein phosphatase 2C family ...		Lus10038455 [exp]	32.8	0.6110
AT3G47570			Leucine-rich repeat protein ki...		Lus10030856 [exp]	39.9	0.6283
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10031478 [exp]	46.0	0.6102
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10021554 [exp]	49.3	0.6417
AT4G21020			Late embryogenesis abundant pr...		Lus10015427 [exp]	50.4	0.6078

Compare expression of checked genes

Lus10008960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.