Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023419 [exp] 84 / 6e-20 AT3G12580 100 / 1e-23 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10016844 [exp] 77 / 5e-18 ND / Lus10016843 [exp] 70 / 2e-15 ND / Lus10008963 [exp] 46 / 3e-06 AT1G66240 81 / 5e-20 homolog of anti-oxidant 1 (.1.2.3) Lus10037718 [exp] 41 / 0.0001 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12274 [flax] [poplar] DUF3615 Protein of unknown function (DUF3615)
Representative CDS sequence Show only first row Show all	>Lus10008962 pacid=23175129 polypeptide=Lus10008962 locus=Lus10008962.g ID=Lus10008962.BGIv1.0 annot-version=v1.0 ATGGCGACTCTGCATCCACTTAAAGAAGAGCCGTTTGCTGATGAGAACATGAAGCGGAGAATCACTGAGTGTCCAGAGTTGAAACGTCCTACTATGCAAG AACGTCTTGATATGCAGAGCAGAGCAGCTGGAGAAGCGGCTATCAAACGCTATAACAGGAAAAAGGGTGTCAATTACGAGTTCGATATGCCCTTGAACAG CAACGGGTTCTCATGTTATGGTAAAGATTTCATACATGTCAACTTTACCGCTAACAATCTGGAGGATGTCTCTGCTCCCAGTAAACTGTTTTTTGCTGAG GTGGGTTACCTTCGGTTTTGGAAGGCGGTGAGTTACAGTGAATGTGCCATCGAGGATCCTACAGAAACTGATCCTATGAAGGTATCGAAAGGTTGTACGT TCTGTTCCAGCGCTTTTACGACACCTATTCTCCATGCTGTTGGACACTTCACCCTTGGCAAGTATGAAAAATTCTGCTATGTTCATCTGGAGTGCGAAGA GGAAGATGAGGGAGGCTGGGGTTAA
AA sequence Show only first row Show all	>Lus10008962 pacid=23175129 polypeptide=Lus10008962 locus=Lus10008962.g ID=Lus10008962.BGIv1.0 annot-version=v1.0 MATLHPLKEEPFADENMKRRITECPELKRPTMQERLDMQSRAAGEAAIKRYNRKKGVNYEFDMPLNSNGFSCYGKDFIHVNFTANNLEDVSAPSKLFFAE VGYLRFWKAVSYSECAIEDPTETDPMKVSKGCTFCSSAFTTPILHAVGHFTLGKYEKFCYVHLECEEEDEGGWG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008962 [exp]	0	1
AT4G16450			unknown protein		Lus10038803 [exp]	5.5	0.7587
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10035094 [exp]	8.1	0.7449
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10000062 [exp]	10.4	0.7059
AT2G15910			CSL zinc finger domain-contain...		Lus10023841 [exp]	12.2	0.7359
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Lus10011641 [exp]	12.2	0.7382
AT2G41600			Mitochondrial glycoprotein fam...		Lus10042042 [exp]	12.4	0.6881
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10029014 [exp]	12.5	0.7009
AT3G08610			unknown protein		Lus10009864 [exp]	14.2	0.6348
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10008156 [exp]	14.5	0.7280
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005876 [exp]	21.9	0.6981

Compare expression of checked genes

Lus10008962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.