Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66240 81 / 6e-20 ATX1, ATATX1 homolog of anti-oxidant 1 (.1.2.3) AT3G56240 76 / 8e-18 ATX1, CCH copper chaperone (.1) AT5G27690 49 / 5e-07 Heavy metal transport/detoxification superfamily protein (.1) AT5G17450 45 / 2e-06 HIPP21 heavy metal associated isoprenylated plant protein 21, Heavy metal transport/detoxification superfamily protein (.1.2) AT3G56891 45 / 4e-06 Heavy metal transport/detoxification superfamily protein (.1) AT1G71050 43 / 2e-05 HIPP20 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) AT4G08570 43 / 3e-05 Heavy metal transport/detoxification superfamily protein (.1) AT1G06330 42 / 4e-05 Heavy metal transport/detoxification superfamily protein (.1) AT5G05365 40 / 9e-05 Heavy metal transport/detoxification superfamily protein (.1) AT1G22990 41 / 0.0001 HIPP22 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028859 [exp] 102 / 2e-27 AT1G66240 125 / 8e-38 homolog of anti-oxidant 1 (.1.2.3) Lus10043444 [exp] 79 / 5e-19 AT1G66240 127 / 4e-39 homolog of anti-oxidant 1 (.1.2.3) Lus10034138 [exp] 74 / 1e-15 AT1G66240 115 / 1e-32 homolog of anti-oxidant 1 (.1.2.3) Lus10037718 [exp] 63 / 2e-12 ND / Lus10013911 [exp] 51 / 5e-08 AT1G06330 103 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1) Lus10001892 [exp] 50 / 1e-07 AT1G06330 101 / 1e-27 Heavy metal transport/detoxification superfamily protein (.1) Lus10032446 [exp] 47 / 2e-06 AT1G71050 175 / 2e-56 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) Lus10042946 [exp] 46 / 2e-06 AT1G71050 196 / 3e-65 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) Lus10008962 [exp] 46 / 4e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G236500 [exp] 79 / 3e-19 AT1G66240 129 / 1e-40 homolog of anti-oxidant 1 (.1.2.3) Potri.008G023800 [exp] 77 / 2e-18 AT1G66240 124 / 7e-39 homolog of anti-oxidant 1 (.1.2.3) Potri.006G024800 [exp] 54 / 2e-09 AT3G56891 167 / 5e-54 Heavy metal transport/detoxification superfamily protein (.1) Potri.002G092200 [exp] 49 / 3e-07 AT4G08570 193 / 3e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G114600 [exp] 47 / 6e-07 AT1G22990 194 / 9e-65 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1) Potri.005G167000 [exp] 46 / 2e-06 AT4G08570 229 / 1e-78 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G106500 [exp] 44 / 8e-06 AT1G06330 217 / 1e-73 Heavy metal transport/detoxification superfamily protein (.1) Potri.011G065600 [exp] 44 / 9e-06 AT1G06330 159 / 7e-51 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G003700 [exp] 44 / 1e-05 AT4G08570 207 / 5e-70 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G107500 [exp] 44 / 1e-05 AT1G06330 213 / 5e-72 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12274 [flax] [poplar] DUF3615 Protein of unknown function (DUF3615) PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10008963 pacid=23175169 polypeptide=Lus10008963 locus=Lus10008963.g ID=Lus10008963.BGIv1.0 annot-version=v1.0 ATGGAGCTCTCTTCTAAAACGAAACGAGAGAAGCAGCCATCCGCCTTAAAGCTAAAAAGTGGCAAACAGCCATCCGCTGAAACCCTTAACTCAACACTCG ATCTTAGACGTTCGCCGCCTGCGATGGAAGACCCGCAGGTGATGCCAGCAGGAGATCCGGTGCCGGTTCCATCGCTCATCCCGGCATTCGATGACCCAGA ACTGGTTCTGCAGCGGCAGCGTGTTGGGACGTTTCAGGGTGTGGATTATGTGCTTGATACCCCCTTGAACATCCGTGTGTTTCATGACTTTTCTGCTCGT GCTGCTATCCTGCATTCCAGCTTTACTGCTAAGAAGAAGGATAGTTTATCCGGAGAAAGTGAGCTGTTTTTTCTAGAGTCAAAGTACAACAAGGATGGGG TTGGGCTGGATTTCATTACATGCTGCATCATTGATCCTGCTGAAATTGATGGTGTGGAGTCTTTTGACATTGACATGAAGGAGCAGAAAGTTACGGTGAA AGGAAACGTCAAGCCAGAGGCGGTTCTCCAGACCGTGTCAAAGACCGGGAAGAAAACTGCATTCTGGGATGGTGGAGAAGCAGCTGGTGCTGCCACTGTT GCCTAA
AA sequence Show only first row Show all	>Lus10008963 pacid=23175169 polypeptide=Lus10008963 locus=Lus10008963.g ID=Lus10008963.BGIv1.0 annot-version=v1.0 MELSSKTKREKQPSALKLKSGKQPSAETLNSTLDLRRSPPAMEDPQVMPAGDPVPVPSLIPAFDDPELVLQRQRVGTFQGVDYVLDTPLNIRVFHDFSAR AAILHSSFTAKKKDSLSGESELFFLESKYNKDGVGLDFITCCIIDPAEIDGVESFDIDMKEQKVTVKGNVKPEAVLQTVSKTGKKTAFWDGGEAAGAATV A

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10008963 [exp]	0	1
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10032574 [exp]	2.8	0.9028
AT1G30090			Galactose oxidase/kelch repeat...		Lus10042824 [exp]	6.0	0.8983
AT5G42000			ORMDL family protein (.1.2)		Lus10033219 [exp]	7.5	0.8868
AT4G27880			Protein with RING/U-box and TR...		Lus10022405 [exp]	13.0	0.8891
AT2G02870			Galactose oxidase/kelch repeat...		Lus10037196 [exp]	14.8	0.8968
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10028823 [exp]	15.5	0.8782
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10017129 [exp]	16.2	0.8807
AT4G24370			unknown protein		Lus10017369 [exp]	18.8	0.8701
AT3G50810			Uncharacterised protein family...		Lus10016784 [exp]	23.6	0.8718
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10002565 [exp]	23.7	0.8897

Compare expression of checked genes

Lus10008963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.