Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24460 256 / 3e-80 CLT2 CRT (chloroquine-resistance transporter)-like transporter 2 (.1), CRT (chloroquine-resistance transporter)-like transporter 2 (.2) AT5G12170 234 / 1e-71 CLT3 CRT (chloroquine-resistance transporter)-like transporter 3 (.2) AT5G19380 233 / 3e-71 CLT1 CRT (chloroquine-resistance transporter)-like transporter 1 (.1), CRT (chloroquine-resistance transporter)-like transporter 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028858 [exp] 463 / 9e-163 AT4G24460 326 / 5e-110 CRT (chloroquine-resistance transporter)-like transporter 2 (.1), CRT (chloroquine-resistance transporter)-like transporter 2 (.2) Lus10000891 [exp] 176 / 7e-49 AT5G12170 364 / 1e-120 CRT (chloroquine-resistance transporter)-like transporter 3 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G069400 [exp] 244 / 1e-75 AT5G19380 422 / 4e-145 CRT (chloroquine-resistance transporter)-like transporter 1 (.1), CRT (chloroquine-resistance transporter)-like transporter 1 (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008964 pacid=23175165 polypeptide=Lus10008964 locus=Lus10008964.g ID=Lus10008964.BGIv1.0 annot-version=v1.0 ATGGGAACTTTCTCCGCCGCCTCGTTTTCCTCCCTTCTCTCTCCTTCTTCCCGGTCATCCTCCTCCTTCCACCATGCCCCACCACCGCTTTGTCGTAGTA GCCACTCTCTTCCCCCCACACCGCTTCTTCTCCCGACCGGCGGGAGCTCCAATCTGACGTCCCCGTCTCTTCTTCGCCGCCGGGATCACATTCTGCTCGG ATCTCCACCACGTAATGTCTCGGCTCGGGCGGAGCAGCGGTCAGGCGACAGCAGCAGTAGCAGTACCCAGCTGGTGGTGGCGAGCTCGGCGGCGACGATA GCTCTGGCGGTGGCGAATCGAGTGCTGTACAAGCTCGCCCTTGTTCCGATGAAGGATTACCCCTTCTTCCTAGCTCAGTTTACTACCTTCGGGTACGTGG TGATTTACTCGTCGATATTGCATATGAGGTACCGTGCAGGGATTGTGAGCGATGAGATGTTGGCGCTTCCTAAATCTCGGTATGCTGCCATTGGTGCTTT TGAAGCTGTTGGAACCCTAATTGGAATGTACGCTGCTGCCAATCTACCTGGACCTTCTATACCTATACTGCATCAGACATTCTTGATATGGCAACTTGCT TTTTCGAGTATTTTCCTCGGCCGGAGGTACTCGTATGCTCAAATGGCTGGCTGCTTGCTTGTAGCTATTGGTGTAGTCATGGCTGTGACAAGTGGATCCA GTGACGAGCAGATGCTATCTGGTGACGAGTACATGTGGGCAGCAGTCATGATATTATCCAGCGCTCTTCATTCCGGTGCTATGATACTAAAGGGGAAGTC GCTTGACATATTTGTTGTCAATACATTAGGCTCTGGATTTCAGGCTCTTTTTGTGCTGATGTTTCTTCCCCTCATGTCGAACTTCAAGGGCATTCCACTT GCTCAGCTTCCATTGTACTTGAAAAATGGGACTGGTAGTTTCCTGAATCTCTGGTCGGACTCGCCAGGCAAGTTCTCGCCTTTCCGGTTTCGTTTTGTGA ATAACATTTGCAAATCGACTGGTGCTCCACTGCTGCCAATGCTGTACATAGCTGCTAACTTGACGTTCAATATATCGATGCTGAAGCTAATGAAGGTTTC ATCTGCGGTTGTATCCTCTCTTGCCACCACCTTAGCAGAATCCTCGGAGAATCAAGAGCCGAGAGCAGCTAAACACGACCATCTCTACGAATTCAAGAGT GTAAACAGATTAACTCACGGACATGGTGGTGGAGGGTCGGGTGGTAATTCCGACAACAGCAATGGCGGTGGCAGAAACACACAAGGTGGGGGAGCAGCAG TACCTGTCATCATAGCCGGTGCAGCGAACAACAACCACCACCAGCAACGGAGGGGTGCTGCCCCTTGCAACAGTGCCAAGAACAACATCTACTGGAGAGG AGTGGCCACCTTGGTTATAGCCGCCACATTGGCCTCTATGTGGAAGCCTTTCCACTTTGAAGTTTGA
AA sequence Show only first row Show all	>Lus10008964 pacid=23175165 polypeptide=Lus10008964 locus=Lus10008964.g ID=Lus10008964.BGIv1.0 annot-version=v1.0 MGTFSAASFSSLLSPSSRSSSSFHHAPPPLCRSSHSLPPTPLLLPTGGSSNLTSPSLLRRRDHILLGSPPRNVSARAEQRSGDSSSSSTQLVVASSAATI ALAVANRVLYKLALVPMKDYPFFLAQFTTFGYVVIYSSILHMRYRAGIVSDEMLALPKSRYAAIGAFEAVGTLIGMYAAANLPGPSIPILHQTFLIWQLA FSSIFLGRRYSYAQMAGCLLVAIGVVMAVTSGSSDEQMLSGDEYMWAAVMILSSALHSGAMILKGKSLDIFVVNTLGSGFQALFVLMFLPLMSNFKGIPL AQLPLYLKNGTGSFLNLWSDSPGKFSPFRFRFVNNICKSTGAPLLPMLYIAANLTFNISMLKLMKVSSAVVSSLATTLAESSENQEPRAAKHDHLYEFKS VNRLTHGHGGGGSGGNSDNSNGGGRNTQGGGAAVPVIIAGAANNNHHQQRRGAAPCNSAKNNIYWRGVATLVIAATLASMWKPFHFEV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10008964 [exp]	0	1
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10002491 [exp]	2.0	0.9242
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10019897 [exp]	3.9	0.8817
AT5G01800			saposin B domain-containing pr...		Lus10014162 [exp]	4.0	0.8827
AT1G72510			Protein of unknown function (D...		Lus10015670 [exp]	10.1	0.8909
AT5G47860			Protein of unknown function (D...		Lus10042222 [exp]	11.5	0.8515
AT4G04740		CPK23, ATCPK23	calcium-dependent protein kina...		Lus10022624 [exp]	19.0	0.8802
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10004821 [exp]	20.4	0.8598
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10015547 [exp]	21.7	0.8337
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10035907 [exp]	22.6	0.8394
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10018937 [exp]	22.8	0.8709

Compare expression of checked genes

Lus10008964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.