Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25100 452 / 5e-162 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028856 [exp] 565 / 0 AT2G25100 468 / 3e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G019800 [exp] 471 / 2e-169 AT2G25100 443 / 3e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Potri.010G239500 [exp] 49 / 2e-07 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF01351 [flax] [poplar] RNase_HII Ribonuclease HII
Representative CDS sequence Show only first row Show all	>Lus10008965 pacid=23175138 polypeptide=Lus10008965 locus=Lus10008965.g ID=Lus10008965.BGIv1.0 annot-version=v1.0 ATGGGGTCGGAGGAGATAACAGCAGCTCTGCCGGAATGGGCATCCACTCCTTGCATTATGGGCATCGACGAAGCCGGCCGTGGTCCTGTTCTCGGCCCCA TGGTGTATGGATGCTTGTATTGTGCTCGCTCCTACCAGGAGACTCTATCCACCTTGAGCTTTGCAGACTCAAAGACCTTAAAGGAAGAGAAGAGGGAGGA ATTGTTTGAAAGTCTGAAGCTTGACGAATCAATTGGATGGGCTGTTGATGTCATTGATCCGAGGGAGCTGTCTGCGAAAATGCTAAAGAAGAATAAGATC AATCTGAATGAGATATCTCACGACTCAGCAAGTGGTTTGGTCAAGAGAGTTCTGAACATGGGAGTTCTTCTAACTGAGGTCTATGTTGATACAGTTGGAG ATCCAGAGAAATACAAGGTCAAACTCTCTGAACGATTTCCATCCGTCAAATTTGTGGTGGCAAAGAAGGCTGACAGTCTTTACCCGGTTGTTAGTGGAGC CAGCATAGTTGCAAAGGTCACTAGAGATAGATCCCTGCGAGAATGGACGTTTGATGAAACCTACAAAGACATCGGCAGGAACTTCGGTTCTGGGTACCCT GGAGATCCTGACACAAAAACATGGCTGGAGCAACATAAACACAAAGTGTTTGGGTTCCCCAAATTAGTTCGTTTCAGTTGGGGAACATGTAATTCCTACT TCAAAAATGGTGTAGAAGTTCTGTGGGAGGCTGACATCGACGAAGACAGTACTGGCAACAGTAATGGAAAACGACAGTTGAAGTTAAGCAGCTTTGGAGT TACAACCTCCAAGAAGAAGAAGGAAGAAGTTGAATCAAGCTGTAAAGGCCGCTGCAAGTTCTTCGAGACAAGGAAACTTGAACAACTTACTGATTTCTAA
AA sequence Show only first row Show all	>Lus10008965 pacid=23175138 polypeptide=Lus10008965 locus=Lus10008965.g ID=Lus10008965.BGIv1.0 annot-version=v1.0 MGSEEITAALPEWASTPCIMGIDEAGRGPVLGPMVYGCLYCARSYQETLSTLSFADSKTLKEEKREELFESLKLDESIGWAVDVIDPRELSAKMLKKNKI NLNEISHDSASGLVKRVLNMGVLLTEVYVDTVGDPEKYKVKLSERFPSVKFVVAKKADSLYPVVSGASIVAKVTRDRSLREWTFDETYKDIGRNFGSGYP GDPDTKTWLEQHKHKVFGFPKLVRFSWGTCNSYFKNGVEVLWEADIDEDSTGNSNGKRQLKLSSFGVTTSKKKKEEVESSCKGRCKFFETRKLEQLTDF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25100			Polynucleotidyl transferase, r...		Lus10008965 [exp]	0	1
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10008577 [exp]	2.4	0.8307
AT1G61000			unknown protein		Lus10020820 [exp]	10.7	0.8419
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10020167 [exp]	13.7	0.8392
AT5G65120			unknown protein		Lus10016802 [exp]	16.6	0.8402
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10019044 [exp]	17.0	0.8156
AT3G17430			Nucleotide-sugar transporter f...		Lus10018339 [exp]	24.1	0.7505
AT3G48540			Cytidine/deoxycytidylate deami...		Lus10022452 [exp]	26.2	0.8134
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Lus10018688 [exp]	27.9	0.8036
AT5G52800			DNA primases (.1.2.3)		Lus10014953 [exp]	27.9	0.8322
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Lus10009016 [exp]	30.0	0.8131

Compare expression of checked genes

Lus10008965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.