Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54250 626 / 0 GHMP kinase family protein (.1) AT2G38700 598 / 0 ATMVD1, MVD1 mevalonate diphosphate decarboxylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043438 [exp] 699 / 0 AT3G54250 681 / 0.0 GHMP kinase family protein (.1) Lus10034147 [exp] 692 / 0 AT3G54250 674 / 0.0 GHMP kinase family protein (.1) Lus10028855 [exp] 685 / 0 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237900 [exp] 688 / 0 AT3G54250 688 / 0.0 GHMP kinase family protein (.1) Potri.008G021100 [exp] 684 / 0 AT3G54250 683 / 0.0 GHMP kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008966 pacid=23175141 polypeptide=Lus10008966 locus=Lus10008966.g ID=Lus10008966.BGIv1.0 annot-version=v1.0 ATGGCGGATAAGTGGGTGAGGATGGTGACAGCGCAAACTCCCACCAATATAGCAGTGATTAAGTACTGGGGAAAAAGGGATGAGGACTTGATTTTACCAG TCAATGACAGCATAAGTGTCGCTTTGGATCCGGCTCATCTCTGCACTACCACCACTGTTGCAGTTAGTCCCACCTTTGATCGGGATCGGATGTGGCTCAA TGGAGAGGAGGTTTCCCTCTCTGGAGCCCGGTATCAGAATTGCTTGCGAGAGATTCGTGCTCGTGCTTGTGATATCGAGGATGAGGAGAAGGGTATCAAG ATAGAGAATAAGAATTGGGAAAAATTGCATGTACATATAGCTTCGTATAACAACTTTCCTACTGCTGCTGGATTGGCTTCATCTGCAGCTGGGTTTGCAT GCCTTGTTTTTGCCCTTGCAAAGCTAATGAATGCAAAAGAAGATAACAGTGATCTTTCTGCAATTGCTAGACAAGGTTCTGGAAGTGCATGCCGCAGTCT GTTCGGTGGATTTGTGAAGTGGGTCATGGGAGATGATAAGGCTGGGCGTGACAGCCTTGCTGTTCAGCTCGAAGACGAGAATCACTGGGATGAACTCGTC ATTATTATTGCTGTGGTAAGTTCACGGCAGAAAGAAACAAGTAGCACTTCAGGAATGCGGGAAAGTGTTGAAACTAGTTTGCTTTTGCAGCATCGAGCAA AGGAAGTTGTACCGAAACGGATTGTCCAAATGGAGGAGGCCATAAGAACCAAAGATTTTGCCTCTTTCACAGCGTTAACCTGTGCTGATAGTAATCAGTT CCACGCAGTCTGCCTAGACACTTGCCCGCCGATATTCTACATGAACGATACATCCCATAGGATAATCAGCTGCGTCGAGAAATGGAATAGATCTCAAGCA ACAGCTCAGGTGGCTTACACCTTTGATGCTGGGCCGAATGCTGTTCTAATTGCTCGTAACCGGGAAGTTGCTTCTCAACTCTTGCAAAAACTGCTCTTTT ACTTCCCTCCAAGCTCCAATACAGACTTAAACAATTATGTAATTGGAGACAAGTCAATCCTCAAAGATGCTGGAATACAAACCATAAAGGACATCGAAGC TCTACCCTCACCTCCAGAAAGCAAGGACACTCAGAGGCACAAAGATGGCGTAAGCTACTTCATCTGCACGAAACCCGGCAGAGGCCCCATGTTGCTCAGC GATGAAAGCCAGTCTCTTCTGAATCCACAAACTGGGCTGCCGAAGTAA
AA sequence Show only first row Show all	>Lus10008966 pacid=23175141 polypeptide=Lus10008966 locus=Lus10008966.g ID=Lus10008966.BGIv1.0 annot-version=v1.0 MADKWVRMVTAQTPTNIAVIKYWGKRDEDLILPVNDSISVALDPAHLCTTTTVAVSPTFDRDRMWLNGEEVSLSGARYQNCLREIRARACDIEDEEKGIK IENKNWEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNAKEDNSDLSAIARQGSGSACRSLFGGFVKWVMGDDKAGRDSLAVQLEDENHWDELV IIIAVVSSRQKETSSTSGMRESVETSLLLQHRAKEVVPKRIVQMEEAIRTKDFASFTALTCADSNQFHAVCLDTCPPIFYMNDTSHRIISCVEKWNRSQA TAQVAYTFDAGPNAVLIARNREVASQLLQKLLFYFPPSSNTDLNNYVIGDKSILKDAGIQTIKDIEALPSPPESKDTQRHKDGVSYFICTKPGRGPMLLS DESQSLLNPQTGLPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54250			GHMP kinase family protein (.1...		Lus10008966 [exp]	0	1
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10008091 [exp]	9.3	0.7525
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10032396 [exp]	23.3	0.5606
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014570 [exp]	51.5	0.6658
AT4G32840		PFK6	phosphofructokinase 6 (.1)		Lus10005488 [exp]	63.0	0.6506
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10034471 [exp]	74.9	0.6533
AT1G76270			O-fucosyltransferase family pr...		Lus10030754 [exp]	87.0	0.6419
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10018642 [exp]	198.0	0.5915

Compare expression of checked genes

Lus10008966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.