Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21300 859 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 497 / 5e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 487 / 6e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 480 / 2e-156 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 476 / 9e-155 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 476 / 5e-153 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 467 / 3e-152 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 462 / 4e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G63370 463 / 5e-150 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 452 / 3e-146 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028855 [exp] 1620 / 0 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 504 / 9e-165 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 496 / 1e-161 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 493 / 2e-161 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 491 / 7e-160 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 485 / 3e-158 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 486 / 4e-158 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 483 / 1e-157 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038400 [exp] 481 / 7e-157 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G156800 [exp] 1001 / 0 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 537 / 1e-176 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 507 / 1e-167 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 506 / 1e-166 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 504 / 9e-165 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 500 / 6e-162 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 488 / 3e-158 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G080200 [exp] 473 / 2e-154 AT1G11290 447 / 3e-145 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075800 [exp] 474 / 4e-154 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 476 / 2e-153 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10008967 pacid=23175181 polypeptide=Lus10008967 locus=Lus10008967.g ID=Lus10008967.BGIv1.0 annot-version=v1.0 ATGCATAAACTGCAGTTTTTCCGTCCACGTTTCTCGTCTAGTGTCAGTGGGTTGTTTAAAGCTAGCATCTCAAGCACAATCTCACTTCACTCTCTTTCTG TATCAAATCAGTGGGAATGGTCGGATGAGTCTATAGTAAGCAGACTTGAAGCTGTCTTGCAACTTTGTTCTGGACCTTCTAATCTTGGACAAGGGAAACA AGTTCATGCCCAGTTGATAATTCATGGACTACTGGATGCTGGCTTGCTGGGGCCGAAGATTTTGGGGATATATGTTCTCCATGACAGCTTCAGGGATGCT GTCAAAATGTTTTATCAGATCCCTTTGGGTTATACCATGCCTTGGAATTGGATGATCAGAGGATTTAACAAACTGGGTTGCTTTGATATGGCTTTACTGT TTTACTTCAAAATGTCAGCTTGTGGGGTTTACCCAGATAAGTATACATTTCCTTCTATAATGAAAGCTTGTTGTGGATTGAACAACGTGGCATTGGGGAA GCTGATTCATAATGACGTTTTAGAAATGGGGTTTTATCTGGATATGTACATGGGTAGTTCGTTAGTGAAGTTGTACGCTGAGAACGGGAATCTGCAAGAT GCACGTTTATTATTCAATAGAATGTCTCAAAAAGATTGTGTTATGTGGAATGTGATGCTTAGCAGTTTTGCAAGATACGGGGAGTTAGGTGGTGTCCTGA AAACGTTCAATGAGATGAGAAATTCAGGAGTTATACCCAATGCAGTTACCTTTGCTTGTGTTCTTTCTGTCTGCAACGCTGAAACGATGATTGGCTTTGG CTATTTGATTCATGGGCTTGCTGTTACTCACGGGTTGCAGTTTGATCCACAAGTAGCAAATACGCTAGTTTCCATGTACTCAAAAAGCAGGCATTTGATT GATGCACGAAAGATGTTTGATAGGATGTCAGAGACTGATTTGGTTAAGTGGAATGGCATGATGGCGGGATTGGTGCAACACGGGTTTATGGAAGATGCTT CAAATTTGTTCAATGAGATGATATCTGCAGGCATTAAACCAGACTCAAGGACATTTGCCACTTTCCTTCCATCAGTTACGGACTCTATGAGTTTCTCACT TGTTAAGGAAATTCATGGTTATATAATTAGACATGATATATGTCTGGACGTATTCTTGAAAAGTGCACTCATTGACATCTACTGTAAGTGCAGGAATGTG GAGATGGCACATAAGATTTTCAGCCAAGGTAGCAACATTGATTTGGTAATGTGTACAGCTATGATCTCAGGCTATGTGCTAAATGGAAAAGAAAACAGAG CATTAGAAGTTTTCAGGTGGTTGCTTCTGGAGAAGATGACTCCAAATTCTCTTACCATGACAAGTGTTTTACCTGCATGTGCCGGTTTGGCAGCTTTAAA ACTGGGGAAGGAATTGCATGGTAATATCATGAAGAATGGCTTATTAAAGGGTAATGTTCACTTAGAAAGTGCTGTCATGGACATGTATGCAAAATGTGGA AGACTGGATCTCGCTCACCAAACTTTTAGAAGAATGTCTGTAAAAGATGCTGTTAGTTGGAACTCAATAATCACTAGTTGTACTCAGAATAGTAGTCCAG AAGAGGCCATAGATCTGTTCCGTCAAATGGGAAGGGAAGGACTTACATATAACCGAGTAACAATCTCAGCTGCTTTATCTGCTTGTTCAAACTTGCCAGC ACTCCACTATGGGAAACAGATACACAACGTCTTAGTCAAGAGTGCAGTTGACTCTGATGTCTTTGCCGAAAGTGCATTGATAGACATGTATGCCAAATGC GGTTACTTGGAAGTTGCTCGATGCGTGTTTGATAACATGGCAACAAAGAACGAGGTTTCATGGAACAGTATCATCGCCGCCTACTCCAACAATGGTTGCC TAGATGAGACTCTAATTCTATTCCATGAGATGTTGGATAATGGAATTCAACCTGATCATGTCACGTTTCTCGCTATAATATCTGCTTGTGCGCATGCTGG CCGAGTAGATGATGGAATTCGGTACTTCCATTACATGACTGAAGTCTGTGGGATCCCGAAAAAGATGGAACATTATGCTTGTGTCGTTGATATGTTTGGC CGTGCTGGTCGGCTGAACGAAGCATTTGATTTCATAAAGAGCATGCCTTTCCAACCTGATGCAGGTATTTGGGGGACATTGCTTGGAGCATGTCGGGTTC ATGGCAATGTTGAGCTTGGTAAAGAGGCGTCAAGATATCTCCTTGAGTTAGATCCAAAAAATTCTGGATACTATGTACTTCTTGCGAACATGCATGCAGA TGCCAGTCAATGGAAAAGCGTCCGTAACATAAGAAGTCTGATGAAAGATAGAGGCGTAAATAAAGTACCTGGTTATAGCTGGGTTGATGTCAACCATACC ACTCATATGTTTGTTGCTGCAGATGGAAGCCACCCTGAGTCTACCGAAATTTATTCATTGCTCCAGAATCTCCTTCCAGAACTAAGAAAAGAGGGCTATG CTCCTCAATCTTACCTTCCAATGCATTCCCATGATAACATTCAAAATGACAGGGTTAGCAGCAGGACAAACTGA
AA sequence Show only first row Show all	>Lus10008967 pacid=23175181 polypeptide=Lus10008967 locus=Lus10008967.g ID=Lus10008967.BGIv1.0 annot-version=v1.0 MHKLQFFRPRFSSSVSGLFKASISSTISLHSLSVSNQWEWSDESIVSRLEAVLQLCSGPSNLGQGKQVHAQLIIHGLLDAGLLGPKILGIYVLHDSFRDA VKMFYQIPLGYTMPWNWMIRGFNKLGCFDMALLFYFKMSACGVYPDKYTFPSIMKACCGLNNVALGKLIHNDVLEMGFYLDMYMGSSLVKLYAENGNLQD ARLLFNRMSQKDCVMWNVMLSSFARYGELGGVLKTFNEMRNSGVIPNAVTFACVLSVCNAETMIGFGYLIHGLAVTHGLQFDPQVANTLVSMYSKSRHLI DARKMFDRMSETDLVKWNGMMAGLVQHGFMEDASNLFNEMISAGIKPDSRTFATFLPSVTDSMSFSLVKEIHGYIIRHDICLDVFLKSALIDIYCKCRNV EMAHKIFSQGSNIDLVMCTAMISGYVLNGKENRALEVFRWLLLEKMTPNSLTMTSVLPACAGLAALKLGKELHGNIMKNGLLKGNVHLESAVMDMYAKCG RLDLAHQTFRRMSVKDAVSWNSIITSCTQNSSPEEAIDLFRQMGREGLTYNRVTISAALSACSNLPALHYGKQIHNVLVKSAVDSDVFAESALIDMYAKC GYLEVARCVFDNMATKNEVSWNSIIAAYSNNGCLDETLILFHEMLDNGIQPDHVTFLAIISACAHAGRVDDGIRYFHYMTEVCGIPKKMEHYACVVDMFG RAGRLNEAFDFIKSMPFQPDAGIWGTLLGACRVHGNVELGKEASRYLLELDPKNSGYYVLLANMHADASQWKSVRNIRSLMKDRGVNKVPGYSWVDVNHT THMFVAADGSHPESTEIYSLLQNLLPELRKEGYAPQSYLPMHSHDNIQNDRVSSRTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10008967 [exp]	0	1
AT5G39350			Tetratricopeptide repeat (TPR)...		Lus10008136 [exp]	2.4	0.8657
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10043417 [exp]	3.2	0.8064
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	4.5	0.8441
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10023746 [exp]	4.7	0.8621
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	4.9	0.8552
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Lus10011468 [exp]	4.9	0.8248
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10005692 [exp]	5.8	0.7990
AT5G17370			Transducin/WD40 repeat-like su...		Lus10001227 [exp]	7.5	0.8218
AT1G12930			ARM repeat superfamily protein...		Lus10012590 [exp]	9.5	0.8035
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10041689 [exp]	10.0	0.8370

Compare expression of checked genes

Lus10008967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.