Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74300 442 / 4e-156 alpha/beta-Hydrolases superfamily protein (.1) AT2G36290 442 / 8e-156 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 421 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) AT3G48410 418 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 416 / 2e-145 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 403 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1) AT5G22460 372 / 1e-128 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03240 303 / 1e-101 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 292 / 2e-97 alpha/beta-Hydrolases superfamily protein (.1) AT1G08310 277 / 1e-91 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034148 [exp] 583 / 0 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 575 / 0 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 530 / 0 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 522 / 0 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10039775 [exp] 521 / 0 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 445 / 3e-157 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10028854 [exp] 421 / 1e-149 AT2G36290 275 / 2e-92 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 418 / 3e-146 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10021371 [exp] 410 / 6e-143 AT3G48410 473 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G021000 [exp] 466 / 3e-165 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 463 / 1e-164 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237700 [exp] 463 / 2e-164 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 460 / 3e-163 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 458 / 2e-162 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 404 / 2e-141 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 385 / 1e-133 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164600 [exp] 332 / 6e-113 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G131300 [exp] 146 / 2e-39 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 140 / 4e-37 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10008968 pacid=23175168 polypeptide=Lus10008968 locus=Lus10008968.g ID=Lus10008968.BGIv1.0 annot-version=v1.0 ATGTTACAAGAAGTTGCAGCCGCTATGGTGATCGGAATTGGAATCCTGACATGGATCCACCGCTCTTTCCTTCGTCCACCTCCTCCCAACATCTGCGGCT CCCCCGGCGGACCTCCGGTCACCGCTCCCCGGATTAAGCTCCGCGATGGCCGCCACCTGGCATACAAAGAACACGGCGTTCCAAAGGAAACCGCCAACTT CAAAGTCATATTCGTCCACGGATTCACCTCCAGCCGCCTCGATCCCATGATCGCCACCTCCATCTCTCCGGAAGCAATAGAGGAGTTGAGAGTCTACGCG TTGACTTTCGATAGGCCAGGTTATGGCGAGAGTGACCCGGACCCAACCCGTACACCGAGGAGTTTGGCGCTAGATATCGAGGAACTGGCGGATCAATTAG GGTTGGGGGAGAAGTTCTACGTGATGGGGAAGTCAATGGGAGGGCAGGTGGTTTGGGGATGTTTGAAGTATATACCACACAGGCTAGCCGGGGCGGCCTT GGTGGCGCCGGTGATCAATTACTGGTGGCGGAGTTTTCCGGCGAGGATGAGGAAAGAGGCGTACAGGATGCAACTGGTGCAGGATCAGTGGGCGCTGCGG GTGGCGCATTACGCACCGTGGCTGAACTACTGGTGGAACACGCAGAAGATGTTCCCGGCCTCCGGTGTTATAGCTCGGAAGAAGGAGATGCTTTCGGCGC AGGATGCAGAGTTCATTTCGAAGCACGGCGACCGGCCTGACTACCTCAAGAAAGCGGCAACACAACAGGGAGTGCACGAGTCGCTGCACAGGGACATGAT GGTGGGGTTCGGGAAGTGGGAATTCGATCCGATGGAGATCGAGAATCCTTTTCCGAACAATGAAGGATCCGTGCATTTGTGGCAAGGGGATGAAGATAGG AAGGTTCCGGTAGAGTTGCAGCGTTACATTGCAAAGAAGCTGTCGTGGATTCAGTACCATGAGATTCCTGGAGGAGGGCATATTCTTCTTTCCCCTCCGA AATTGATGGAGGATATTCTCATATCTCTTCTGGCCAAACCACAAACAAACCCAGACACATTACTAAATGCATAA
AA sequence Show only first row Show all	>Lus10008968 pacid=23175168 polypeptide=Lus10008968 locus=Lus10008968.g ID=Lus10008968.BGIv1.0 annot-version=v1.0 MLQEVAAAMVIGIGILTWIHRSFLRPPPPNICGSPGGPPVTAPRIKLRDGRHLAYKEHGVPKETANFKVIFVHGFTSSRLDPMIATSISPEAIEELRVYA LTFDRPGYGESDPDPTRTPRSLALDIEELADQLGLGEKFYVMGKSMGGQVVWGCLKYIPHRLAGAALVAPVINYWWRSFPARMRKEAYRMQLVQDQWALR VAHYAPWLNYWWNTQKMFPASGVIARKKEMLSAQDAEFISKHGDRPDYLKKAATQQGVHESLHRDMMVGFGKWEFDPMEIENPFPNNEGSVHLWQGDEDR KVPVELQRYIAKKLSWIQYHEIPGGGHILLSPPKLMEDILISLLAKPQTNPDTLLNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10008968 [exp]	0	1
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10042078 [exp]	1.7	0.9650
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10018083 [exp]	2.8	0.9429
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10028858 [exp]	3.2	0.9519
AT1G54730			Major facilitator superfamily ...		Lus10029960 [exp]	3.9	0.9451
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	7.1	0.9401
AT2G14095			unknown protein		Lus10035649 [exp]	7.7	0.9331
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10020024 [exp]	9.2	0.9289
AT5G46060			Protein of unknown function, D...		Lus10005266 [exp]	11.8	0.9262
AT3G61930			unknown protein		Lus10030203 [exp]	12.3	0.9088
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10009340 [exp]	13.6	0.8772

Compare expression of checked genes

Lus10008968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.