Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04810 1113 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G53700 218 / 1e-59 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G12100 201 / 2e-53 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G64320 198 / 4e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 197 / 4e-53 RPF2 rna processing factor 2 (.1) AT3G54980 199 / 7e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G39230 198 / 2e-52 LOJ LATERAL ORGAN JUNCTION (.1) AT1G62930 194 / 2e-52 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 197 / 5e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 195 / 8e-52 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034149 [exp] 868 / 0 AT5G04810 1157 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10043434 [exp] 858 / 0 AT5G04810 1108 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10028850 [exp] 850 / 0 AT5G04810 689 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10028851 [exp] 575 / 0 AT5G04810 312 / 3e-98 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10007468 [exp] 214 / 3e-58 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003424 [exp] 214 / 3e-57 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10019524 [exp] 211 / 8e-57 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008650 [exp] 206 / 4e-55 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10042529 [exp] 205 / 4e-54 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G017400 [exp] 1219 / 0 AT5G04810 1278 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G241300 [exp] 1207 / 0 AT5G04810 1230 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.009G069600 [exp] 218 / 1e-59 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 214 / 8e-59 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 208 / 3e-56 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 209 / 6e-56 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G139300 [exp] 206 / 1e-55 AT5G01110 275 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 207 / 7e-55 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.002G109500 [exp] 201 / 9e-55 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G050500 [exp] 197 / 2e-53 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10008969 pacid=23175113 polypeptide=Lus10008969 locus=Lus10008969.g ID=Lus10008969.BGIv1.0 annot-version=v1.0 ATGGATATCCTTTCACTCTCTGCTACTTCTTCCTCCTTCCCTCATACCTCAACCACATCTTCTCCCGCCGCCGGCAAAAGACCCACCGCCCCTCTCATTT CCACCACTTCCGTCTCCTTCTCTGCCAAACCAACTCCGCCGCCGGAATTCAACTACCCAAATACCAGGACCCCTTCAGTCCCCCGCCCTCACTCACTCAC TACTCAATCACCACCCACTCCCGATGACAACAAATCCCATCTCCCCCCAATACGATCCTCCCGTGCTGCTTCTCACTCTCTATCCTCCAAGCTCTGGCTC TCGAGCAAGCTCTCTCCGCCTCCCCCTCCACCTCCGCCGCCGCCGCCGTCTCCACCTCCGCTGCGGCGGACCCGTGTTAAGAAAAAGGCCCCAACTTCTG TACCTCGGGAGGAGGTCCTAAAACCCGAATTGCGCGTGCAGGGGAAGATTTTCGTGGGGAATTTGCCTACGCGGATCAAGGAGCACGAATTGGTTGAGTT CTTCCAGCGATTCGGCCGGATCAAGAGCGTAATCCTGTGTAAAGGACGCAACGCGACGGAGAGGAATTCCGGATTTGGATTCGTTGTGTACGACGGAACC ACGGCGGGGGAATCGGCAGCGAAAGCTGAAGAGTTTGATGGGATGGAGTTCCACGGGAGGGTTATCACGGTTAAGTTGGATGACGGGAGGAGACTGAAAG ACAATGCGGAGGATTACAAACCTAAGTGGCATCATCAGGAAAGGGACGGTTCCAGTAAGGCGTTTAGGAGGGTTTTAGATACGCAGCCGGACAATTGGCA GGCCGTCGTTGATGCATTCGATAAGGTCAAGAATCCTTCCAGAAGGGAGTTTGGATGGATGGTGGGATATTACGCAAGACGAGGCGATGTGCATCGAGCA AGACAAACTTTCGAAAGCATGCGAGCGAGGCGAATCGAACCCAGCTCTCATGTCTACACAAGCCTTATACATGCTTATGCAGTGGGTAGAGACATGGAAG AAGCTCTGTCTTGCGTTCGGAAAATGAAGGAGGAGCGTCTCGAGTTGAGCCTGGTGACTTACAGTATTCTTGTTTCTGGATTCGCTAAAATTGGCAATGC CGAAGCCGCCGACTATTGGTTCATGAAGGCCAAGGAGACACAAGCGAACTTAAATGCAATCATATATGGGAGCATTATATATGCTCATTGTCAAACACAT AATATGGATAAAGCTGAAGCATTAGTGAGGGACATGGAAGAAGAAGGCATAGATGCTCCTATGGACATATATCATACGATGATGGATGGATATACTATGG TTGGCAATGAAGAGATGTGTCTGGTTGTATTCCAAAGACTTAAGTTCTACAGAATGGTATCCTGGAATGTCATACAGAATGGTATCCTGGAATGTCTTGT TCATGACTCGAGACACAAGTTGTTGATGCATTCAAGCTGTACAATCAAGTACCTATTGAATGTGGATTTTCACCTTCAGTTGTCACTTATGGATGTCTCA TCAACCTCTATATCAAGGCAAGCTGTGGGAAAAATTTCTAAAGCAATGGAAATTAGCAAACTGATGGAACTTGATGGCATAAAACAGAACATGAAGACGT ATTCCATGTTGATCAATGGATTCCTAAAGTTGAAGGATTGGGCAAATGCATTTGCAGTATTTGAGGATGTTGTGAAAGACGGTCTGAAACCAGATGTGGT GCTATATAATAACATAATTCAAGCATTTTGTTGTATGGGGAATTTCGATCGTGCCCTCAAAGTGGTCAATCGAATGCTCAAGGAAAGGCATAGACCAACC ACACGTACGTTTATGCCCATCATCCATGCATTTGCAAGAGCTGGAGACATGAGAGGAACCCTTGAAACTTTTGATATGATGAGACGGAGTGGGTGCATTC CAACAGTGCACACTTTCAACTCGTTGATCCTTGGTCTTGTCGAGAAGCGTAAGATGGAGAGGGCAGTGGCAATATTGGATGAGATGGCACTAGCAGGTTT AAATCCAAATAAGCATACATACACAACCATCATGCATGGTTTTGCTGCATTAGGGGACACCAGCAAAGCTTTCGAGTATTTCACGAAACTGAGAGACGAA GGGCTAGACCCTGATGTGTTCACATATGAGGCACTGTTGAAGGCATGCTGCAAGTCAGGGAGGATGCAAAGTGCTTTAGCAGTCACTAACGAGATGAGTG CCCGAAACATTCCCAGGAACTGTTTCGTCTACAACATACTAATTGACGGATGGGCACGAAGAGGTGACGTATGGGAAGCTGCTGACCTTATGCAACAAAT GAAACAAGAGGGAGTTCGACCCGACGTTCACACTTATACATCCTTTATAAACGCTTGCAGCAAGGCTGGTGATATGGCGAGAGCGATGAACACGATACAA GAAATGACAGCATACGGAGTGAAGCCAAATATCAAAACATACACTACACTAATCTACGGCTGGGCTCGAGGGTCTCTCCCCGAGAAAGCACTTGGATGCT TCGAACAAATGAAGTCCGAGGGACTGAAGCCTGACAAGGCTGTATATCATTGTTTGATGACATCTCTTCTCTCGAGGGCTACAGTGTCCGAGCCGTACAT TTACTCTGCGATTCTGTCGATATGCAGAGAGATGGTGGAATCCGAGTTGACTGTTGACATGGGTACCGCGGTCCACTGGTCCAAGTGTTTGCGCAAAATT GAGAGAACTGGCGGGGAGATCACGGAAGCTCTGCAGAAAACCTTCCCTCCAGATTGGAGTGCACGCCATTCTCTCGTCTTGAATTCAGGTACGGATGATG ATGAACTGGACAATGATAGTGATGATTCAGCAGTAGGCGATAGCGTTTTAGAGCGAAGATTGTTAGGTTCAGAATGCTTTCAGTTCTAG
AA sequence Show only first row Show all	>Lus10008969 pacid=23175113 polypeptide=Lus10008969 locus=Lus10008969.g ID=Lus10008969.BGIv1.0 annot-version=v1.0 MDILSLSATSSSFPHTSTTSSPAAGKRPTAPLISTTSVSFSAKPTPPPEFNYPNTRTPSVPRPHSLTTQSPPTPDDNKSHLPPIRSSRAASHSLSSKLWL SSKLSPPPPPPPPPPPSPPPLRRTRVKKKAPTSVPREEVLKPELRVQGKIFVGNLPTRIKEHELVEFFQRFGRIKSVILCKGRNATERNSGFGFVVYDGT TAGESAAKAEEFDGMEFHGRVITVKLDDGRRLKDNAEDYKPKWHHQERDGSSKAFRRVLDTQPDNWQAVVDAFDKVKNPSRREFGWMVGYYARRGDVHRA RQTFESMRARRIEPSSHVYTSLIHAYAVGRDMEEALSCVRKMKEERLELSLVTYSILVSGFAKIGNAEAADYWFMKAKETQANLNAIIYGSIIYAHCQTH NMDKAEALVRDMEEEGIDAPMDIYHTMMDGYTMVGNEEMCLVVFQRLKFYRMVSWNVIQNGILECLVHDSRHKLLMHSSCTIKYLLNVDFHLQLSLMDVS STSISRQAVGKISKAMEISKLMELDGIKQNMKTYSMLINGFLKLKDWANAFAVFEDVVKDGLKPDVVLYNNIIQAFCCMGNFDRALKVVNRMLKERHRPT TRTFMPIIHAFARAGDMRGTLETFDMMRRSGCIPTVHTFNSLILGLVEKRKMERAVAILDEMALAGLNPNKHTYTTIMHGFAALGDTSKAFEYFTKLRDE GLDPDVFTYEALLKACCKSGRMQSALAVTNEMSARNIPRNCFVYNILIDGWARRGDVWEAADLMQQMKQEGVRPDVHTYTSFINACSKAGDMARAMNTIQ EMTAYGVKPNIKTYTTLIYGWARGSLPEKALGCFEQMKSEGLKPDKAVYHCLMTSLLSRATVSEPYIYSAILSICREMVESELTVDMGTAVHWSKCLRKI ERTGGEITEALQKTFPPDWSARHSLVLNSGTDDDELDNDSDDSAVGDSVLERRLLGSECFQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10008969 [exp]	0	1
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10013894 [exp]	1.7	0.9222
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10002107 [exp]	3.2	0.9176
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10034149 [exp]	3.7	0.8957
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10028989 [exp]	4.9	0.8880
AT5G04710			Zn-dependent exopeptidases sup...		Lus10034142 [exp]	5.2	0.9094
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031736 [exp]	8.1	0.8996
AT5G25330			Core-2/I-branching beta-1,6-N-...		Lus10002919 [exp]	10.4	0.8512
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001332 [exp]	12.6	0.9077
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10028851 [exp]	14.7	0.8437
AT4G26150	GATA	GATA22, CGA1, G...	GNC-LIKE, GATA TRANSCRIPTION F...		Lus10006000 [exp]	15.2	0.8773

Compare expression of checked genes

Lus10008969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.