Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52490 355 / 7e-108 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G29920 278 / 2e-78 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57710 263 / 1e-73 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57130 260 / 2e-72 Clp amino terminal domain-containing protein (.1) AT4G30350 214 / 3e-57 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT2G40130 133 / 1e-32 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G29970 134 / 8e-32 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT1G07200 128 / 9e-30 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G74310 89 / 2e-17 HOT1, ATHSP101 heat shock protein 101 (.1) AT4G14670 54 / 5e-07 CLPB2 casein lytic proteinase B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028849 [exp] 1186 / 0 AT3G52490 498 / 5e-165 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021291 [exp] 353 / 3e-106 AT3G52490 690 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016966 [exp] 275 / 5e-78 AT3G52490 606 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019984 [exp] 244 / 5e-67 AT5G57710 912 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015511 [exp] 237 / 2e-64 AT5G57710 899 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023201 [exp] 177 / 2e-45 AT5G57710 404 / 1e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040206 [exp] 119 / 5e-27 AT2G40130 569 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10020886 [exp] 115 / 8e-26 AT5G57710 226 / 2e-61 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038320 [exp] 112 / 6e-25 AT2G29970 696 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G241600 [exp] 552 / 0 AT3G52490 641 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G017600 [exp] 479 / 4e-154 AT3G52490 635 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G204500 [exp] 370 / 3e-113 AT3G52490 852 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G071800 [exp] 340 / 4e-102 AT3G52490 785 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G140900 [exp] 313 / 6e-91 AT5G57130 751 / 0.0 Clp amino terminal domain-containing protein (.1) Potri.006G073800 [exp] 300 / 4e-86 AT4G29920 693 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G097300 [exp] 245 / 4e-67 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G175200 [exp] 244 / 1e-66 AT5G57710 913 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G069100 [exp] 134 / 1e-31 AT2G29970 610 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G188200 [exp] 133 / 3e-31 AT1G07200 624 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [flax] [poplar] Clp_N Clp amino terminal domain, pathogenicity island component
Representative CDS sequence Show only first row Show all	>Lus10008970 pacid=23175116 polypeptide=Lus10008970 locus=Lus10008970.g ID=Lus10008970.BGIv1.0 annot-version=v1.0 ATGAGACCAGGAATATGCAGCATGCAGCAAGGGCTTACTCCAGAGGCAGCAGGGATAGTGAAGCAAGCACTAACCTTAGCAAGACGGCGTGGCCATGCCC AAGTCACTCCTCTCCACGTAGCCAGCACTATGCTTGCTTCCCCAGGCGGCCTTTTCCAGCTAGCCTGTCTCCAATCCCACTCCCACCCTCTCCAATCCAA AGCACTTGAGCTCTGCTTCAATGTTTCCCTCAACCGTCTCCCTACTGCCTCAACTTTCCTGAGTGGCCCGCCACACCGATCCTCTGGTTACCCTTCCCTC TCCAATGCATTAGTTGCTGCTTTCAAGCGTGCTCAGACTCACCAGCGACGTGGCTCTATCGACAATCAGCAGCAGCCGTTTTTAGCTGTGAAGATTGAGG CTGAGCAGCTTGTCATCTCCATCTTAGATGATCCTAGTGTCAGTAGAGTCATGAGGGAAGCCGGGTTCTCCAGCACCTATGTCAAGAACAGAGTTGAGCA GGCAGTCAACACTGGTGGTGATAACAACAAGCCTCAACCGATGAAGTCCCTTTCCAATTTCGGACATCAGCATCGGCAGAAGCAGCAGCAGCAGTTTAGG ATACCAAAGCTGGCGCCTTTGGATCATTACAATGTTAATTTTGAGGATGTAAAGGCTGTTCTGAACACAATGGGGAGGAATAATAGGAGGAACATTGTGG TGACAGGAGAGTGTATAGATACTAGTGAGGCTGTGGTTCGAGCTGTGATGGACAATGTGGAGAGAGGTCTAGTCCCTGTGGAGTTGAGGTCTGCGAGGTT TGTCAGTCTTCCACTCTTCTCTCTATGTAGTCTGTCAAAGGAGGAGATTGATATGAAGATTATGGAGTTGAGGTGTAATTACCTGAAGAACAGTAGTGGA TCATCCAAAGGGGTTATTCTGTATGTGGGAGATCTTAACATGGCCGCTGAGTTCTGGTCTAACTACGGGGAGCAAAGTAGATACGTGAGCAGTATCTTGT ACTACAGATCCATGGAGTACATAATCATGGAGATCAAGCGATTGGTGAGGGAGAATAGTGAATCAGGGAAGCTGTGGGTGTTGGGGATTGCTTCTTTCCA GACTTACATGAAGTGCAAAGCAGGGCACCCTTCTCTTGAGACCATGTGGGAGCTTTTCCCACTGACTGTTCCAGTTGGCAGTCTCAGCCTTAGCCTCAAT CTCAACAGTGAACTGGACATTCCAAGAAGCAAAGTATCTCGAAGCAATTATGAAGGTAATTTCCAAAAGAGTGCCTCCACAACACCAACCTCCACCCCAA TCTCCAACTTGCCTCGTTGGCTCCAACAGTGCAAGGAGGACACTGCTGCTGCTGAAGCAAGGAGTAACGACAGTACAAATGCCGCCACTGAAGAGAAAGT ATTCACCTTTTTCGACATCTTCAAACCAAACAAGCGATCCCCTCACCAAACCCCTGACAGTAGTAACTTAAGCACAAGTTTTAGACTAGATGATACCAAA CCAGACCTTCTATCCAACCCAAACTCCAGCCCCAACTCTGCTTCCTCAAGCGAAGCAAATGACGACAGAGAAGATTACCTAGAGAGCTTCAAGGAGTTCA ACGGCGAGAACCTGAAGATCCTCTGTAGTGCTCTGGAGCAGAAAGTCCCGCAACAAAAAGAGATCATCCCAGAAATAGCAACCACAGTCCTGGAGTGCAG GTCCGGGATGAACAGAAGAAATCTAAGCAATTGCCACAACAACAGAGCAGAACAAAGAGAAGACACTTGGTTGCTGTTCTCAGGAGCCGATTCACAAGGC AAAGAGAACGTTGCAAGAGAGCTAGCTAGAGTTGTGTACGGTAGCAGCCAAACCAGCATCGTAACCATTAACAAATTGCCAATAGCCTCGACAACTGAGC GTGCGTCGTCAAGCAGCGGAGAATGCGTTAATGATGTTGATTTGGCTGTTGGAGGATGTCATCAAACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCATCGAAT ATTATCTCAAAGCATGTGAAATGTTATAG
AA sequence Show only first row Show all	>Lus10008970 pacid=23175116 polypeptide=Lus10008970 locus=Lus10008970.g ID=Lus10008970.BGIv1.0 annot-version=v1.0 MRPGICSMQQGLTPEAAGIVKQALTLARRRGHAQVTPLHVASTMLASPGGLFQLACLQSHSHPLQSKALELCFNVSLNRLPTASTFLSGPPHRSSGYPSL SNALVAAFKRAQTHQRRGSIDNQQQPFLAVKIEAEQLVISILDDPSVSRVMREAGFSSTYVKNRVEQAVNTGGDNNKPQPMKSLSNFGHQHRQKQQQQFR IPKLAPLDHYNVNFEDVKAVLNTMGRNNRRNIVVTGECIDTSEAVVRAVMDNVERGLVPVELRSARFVSLPLFSLCSLSKEEIDMKIMELRCNYLKNSSG SSKGVILYVGDLNMAAEFWSNYGEQSRYVSSILYYRSMEYIIMEIKRLVRENSESGKLWVLGIASFQTYMKCKAGHPSLETMWELFPLTVPVGSLSLSLN LNSELDIPRSKVSRSNYEGNFQKSASTTPTSTPISNLPRWLQQCKEDTAAAEARSNDSTNAATEEKVFTFFDIFKPNKRSPHQTPDSSNLSTSFRLDDTK PDLLSNPNSSPNSASSSEANDDREDYLESFKEFNGENLKILCSALEQKVPQQKEIIPEIATTVLECRSGMNRRNLSNCHNNRAEQREDTWLLFSGADSQG KENVARELARVVYGSSQTSIVTINKLPIASTTERASSSSGECVNDVDLAVGGCHQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIEYYLKACEML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52490			Double Clp-N motif-containing ...		Lus10008970 [exp]	0	1
AT3G52490			Double Clp-N motif-containing ...		Lus10028849 [exp]	1.0	0.9490
AT3G52490			Double Clp-N motif-containing ...		Lus10021291 [exp]	2.4	0.9245
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011585 [exp]	3.5	0.9147
AT2G23950			Leucine-rich repeat protein ki...		Lus10019963 [exp]	3.5	0.9127
AT1G62050			Ankyrin repeat family protein ...		Lus10003524 [exp]	3.9	0.9134
AT3G52490			Double Clp-N motif-containing ...		Lus10016966 [exp]	4.2	0.9214
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10038892 [exp]	4.4	0.8817
AT3G51990			Protein kinase superfamily pro...		Lus10019948 [exp]	4.5	0.8815
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035319 [exp]	6.3	0.9058
AT5G28650	WRKY	ATWRKY74, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10042538 [exp]	6.6	0.8965

Compare expression of checked genes

Lus10008970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.