Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04830 225 / 1e-75 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028847 [exp] 279 / 2e-95 AT5G04830 202 / 7e-66 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G241700 [exp] 234 / 8e-79 AT5G04830 264 / 3e-91 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Potri.008G017701 [exp] 108 / 1e-30 AT5G04830 134 / 3e-41 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008971 pacid=23175184 polypeptide=Lus10008971 locus=Lus10008971.g ID=Lus10008971.BGIv1.0 annot-version=v1.0 ATGATTAACATTCGATTCAGCACAAGTTACAATTTCCTCAGACGCTTCTCCAGAATTTCTTCTTCTTTCAGGCAAATGGAGAATGCTTCTAACCCAGTTC CAAACAGCAGCAGCCACCAGCAGCAGCGTGTTTCTGATACCATAATTCCCCATCTTCTCAACTTGTATGCATCGAGGGCTACGGCTGCAGACTTCGAAAT CTATGCTGCAGATGCTTCCTTTGAAGATCCCCTCATGTCTGCTCATGGGGTGAAACAGATCAAATCAGCATTCTATTCAATTCCTAAGATATTCAAAGAG TCCCAGATCGTGGATTACACTATCCAAGAGAACGAACTATCACCTGGAAAGCAAGAGGTACTGATCGACAACAAGCAGCAGTACGTTATCTTTGGAAAGA GCATAGAGATGATCTCACTTATCAAGCTCCAAGTCGAGAACGGCAAGATCATTCGCCATGAAGACTGTTGGGAGAAGAAGCCAATTGAGAACAGAGAAAC AGCCAAGCTAAGGATGCTTGGGCGGCTCAAGGAGATTGTCAGAAGAGGATCCATGTTTGCCACTCATGCTGCCATGGGCTTTGGCAAGGACCCGCCGGCC CAAGCCCAATCCCAGCCGCCATCTACCTAA
AA sequence Show only first row Show all	>Lus10008971 pacid=23175184 polypeptide=Lus10008971 locus=Lus10008971.g ID=Lus10008971.BGIv1.0 annot-version=v1.0 MINIRFSTSYNFLRRFSRISSSFRQMENASNPVPNSSSHQQQRVSDTIIPHLLNLYASRATAADFEIYAADASFEDPLMSAHGVKQIKSAFYSIPKIFKE SQIVDYTIQENELSPGKQEVLIDNKQQYVIFGKSIEMISLIKLQVENGKIIRHEDCWEKKPIENRETAKLRMLGRLKEIVRRGSMFATHAAMGFGKDPPA QAQSQPPST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04830			Nuclear transport factor 2 (NT...		Lus10008971 [exp]	0	1
AT2G36895			unknown protein		Lus10001393 [exp]	1.7	0.8357
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10013703 [exp]	2.4	0.8359
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Lus10033288 [exp]	3.7	0.8223
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Lus10021965 [exp]	4.0	0.7993
AT3G57810			Cysteine proteinases superfami...		Lus10008986 [exp]	6.0	0.8244
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10020788 [exp]	7.7	0.8514
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Lus10038323 [exp]	11.3	0.7812
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036224 [exp]	11.5	0.7969
AT5G13030			unknown protein		Lus10031224 [exp]	12.4	0.7906
AT5G58610			PHD finger transcription facto...		Lus10007741 [exp]	12.5	0.7651

Compare expression of checked genes

Lus10008971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.