Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05280 65 / 3e-13 RING/U-box superfamily protein (.1) AT4G09100 64 / 3e-13 RING/U-box superfamily protein (.1) AT1G72310 66 / 4e-13 ATL3 RING/U-box superfamily protein (.1) AT2G42350 64 / 8e-13 RING/U-box superfamily protein (.1) AT5G17600 65 / 1e-12 RING/U-box superfamily protein (.1) AT4G09110 65 / 1e-12 RING/U-box superfamily protein (.1) AT5G53110 65 / 1e-12 RING/U-box superfamily protein (.1) AT2G20030 65 / 1e-12 RING/U-box superfamily protein (.1) AT3G10910 63 / 1e-12 RING/U-box superfamily protein (.1) AT5G06490 63 / 1e-12 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034153 [exp] 86 / 3e-21 AT2G17450 79 / 2e-18 RING-H2 finger A3A (.1) Lus10043428 [exp] 71 / 1e-14 AT5G03730 710 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10009511 [exp] 69 / 5e-14 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1) Lus10034953 [exp] 68 / 1e-13 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10031515 [exp] 68 / 1e-13 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10011702 [exp] 68 / 1e-13 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1) Lus10012975 [exp] 66 / 6e-13 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10028454 [exp] 64 / 9e-13 AT1G72200 85 / 3e-19 RING/U-box superfamily protein (.1) Lus10041907 [exp] 66 / 1e-12 AT4G36050 410 / 6e-135 endonuclease/exonuclease/phosphatase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G243200 [exp] 82 / 7e-20 AT5G06490 138 / 2e-41 RING/U-box superfamily protein (.1) Potri.010G243500 [exp] 75 / 3e-17 AT5G06490 113 / 6e-32 RING/U-box superfamily protein (.1) Potri.008G019000 [exp] 74 / 7e-17 AT5G06490 131 / 8e-39 RING/U-box superfamily protein (.1) Potri.010G243300 [exp] 72 / 3e-16 AT2G35910 115 / 2e-32 RING/U-box superfamily protein (.1) Potri.010G243400 [exp] 71 / 1e-15 AT2G35910 152 / 4e-47 RING/U-box superfamily protein (.1) Potri.006G201500 [exp] 68 / 1e-14 AT2G35910 122 / 4e-35 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 68 / 2e-14 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.016G067900 [exp] 67 / 3e-14 AT2G35910 129 / 7e-38 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 69 / 4e-14 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 69 / 4e-14 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10008972 pacid=23175156 polypeptide=Lus10008972 locus=Lus10008972.g ID=Lus10008972.BGIv1.0 annot-version=v1.0 ATGTCAGACCCATCATCAGCTTGTTCTTCTTCATCACCAGAAATCACCAAAGCCTTCCCCTTAGCCATCGGCATAACCATCGGCTCCCTCTTCCTCATCT CTTTCTTCATCTCTCTTTGGTTCCTCTCCGCCCGTGCCCGCTACCGCTCCTCCCTCCTCCCCAACCCAACCCTCGCCGACCAAGACGACACCGACGACGA CGACGTCGTTATTGACGTTGGCCCCGTTGACGAGGACACCCACGTGGGCAGCATCGTCCACGACGATGCTGACCTCAGCCGCTTCCCTAAGCTCATCTAT AACAACAACAACAACGGTAATGAAGCAGCGGCGGCGGCGGTGGGGACAAGCTGCGCGATCTGCCTGGCGGAGTACGTGGACGGGGACATCCTGCGGCTGC TCCCGGATTGTGAGCACGTGTTCCACGCGCCGTGCGTGGATCAGTGGCTGCTGATGAAGAACCACTCCTCCACTTGCCCCATCTGCCGCCGCCACTCGCC TGTTCAGGCTCCACCGCCGGCGGATGGTAAGAAATAA
AA sequence Show only first row Show all	>Lus10008972 pacid=23175156 polypeptide=Lus10008972 locus=Lus10008972.g ID=Lus10008972.BGIv1.0 annot-version=v1.0 MSDPSSACSSSSPEITKAFPLAIGITIGSLFLISFFISLWFLSARARYRSSLLPNPTLADQDDTDDDDVVIDVGPVDEDTHVGSIVHDDADLSRFPKLIY NNNNNGNEAAAAAVGTSCAICLAEYVDGDILRLLPDCEHVFHAPCVDQWLLMKNHSSTCPICRRHSPVQAPPPADGKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06490			RING/U-box superfamily protein...		Lus10008972 [exp]	0	1
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024626 [exp]	2.2	0.9667
AT5G49040			Disease resistance-responsive ...		Lus10021082 [exp]	3.9	0.9571
AT2G43870			Pectin lyase-like superfamily ...		Lus10002124 [exp]	4.6	0.9591
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10017285 [exp]	6.9	0.9572
					Lus10025963 [exp]	7.5	0.9555
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039399 [exp]	7.7	0.9606
AT4G24730			Calcineurin-like metallo-phosp...		Lus10017960 [exp]	11.0	0.9236
					Lus10039865 [exp]	13.7	0.9226
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024616 [exp]	14.9	0.9564
AT1G52140			unknown protein		Lus10005478 [exp]	15.7	0.9234

Compare expression of checked genes

Lus10008972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.