Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38680 437 / 1e-154 5'-nucleotidases;magnesium ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G243900 [exp] 470 / 1e-166 AT2G38680 397 / 2e-138 5'-nucleotidases;magnesium ion binding (.1) Potri.008G015201 [exp] 203 / 1e-64 AT2G38680 174 / 3e-54 5'-nucleotidases;magnesium ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF05822 [flax] [poplar] UMPH-1 Pyrimidine 5'-nucleotidase (UMPH-1)
Representative CDS sequence Show only first row Show all	>Lus10008973 pacid=23175175 polypeptide=Lus10008973 locus=Lus10008973.g ID=Lus10008973.BGIv1.0 annot-version=v1.0 ATGAACTTCAGCAGCAGCAGCAGCTCCAGCTCCCAACTACTGAGCAGTCACGTCATTCGCTCCCCTGTGCTTTTCTTCAACTCCTCAGTAACCAACCTCC GGTTCTCAGTAACCAACATGCGCAGGGCCGGAATTCGCGCCGCTAGCTCTTGTAACATCATTCCCAAAATGAACGGCGCCAGCGACGGCGGCGGCGTTCG GGACGTTTCCAAGGTCACGGTGGTCGGAGATCCTTCTTCACTGGAGGACAAAGTTGCCGCAATTCGCATGGATGGCCCTGCTAAACTCCAGGTGATTGCA GACTTCGACGCGACGCTGACCAAGTACTTTGTGAATGGCCGCAGGGGAGAAAGCAGTCATGGTCTGTTGCGCCAAGAGAATCCCGAGTATGACGCCAGGA GGCAAGCTTTGTACGATTACTATCACCCGTTGGAATTCTCCCATTCTATCCCCATTGATGAGAAGACCAAGCTCATGGAGGAGTGGTGGGGGAAAACACA TAACCTTCTTATTGAGGGAGGCCTTACGTATGATGCAATTAAGCAGTCCGTTGCTGCTTCTGGAATTGCTTTCAGGGAGGGAGTTGCTGACCTCTTCGAG TATCTCGAGGAAAGAGATATTCCAGTTCTCATTTTCTCAGCAGGGCTTGCAGATATCATAGAGGAGGTTCTGAGGCAGAAGATTCATCGCCCTTTTAAGA ATGTTAAGATTGTATCTAACAGAATGGAGTTTGATAGTGATGGAAGGCTCGCTTCATTTAAAGGGAAGTTGATTCACAGTCTAAATAAAAATGAGCACGC CCTTGATATGGCTGGTCCTCTTCATGAGCGTCTTGGGGAGTCCAACGGGCTAAATGATGTGGTTAGTGCCTCGGTGAAAGAGAGGACCAATGTGCTCCTT CTTGGTGATCACTTGGGAGACTTAAGAATGTCTGATGGCTTGGACTACAAGACTCGAATCTCCGCTGGATTCCTGAACGACAACATTGAGAACAATCTTC CCGGATACAGAAAAGCATTTGACGTTGTATACCTGCATGATGCACCTATGTGGGGAGTAGTGAACCTGGTATCTCAGCTCTTTCCAACTCACAGCTCGTG A
AA sequence Show only first row Show all	>Lus10008973 pacid=23175175 polypeptide=Lus10008973 locus=Lus10008973.g ID=Lus10008973.BGIv1.0 annot-version=v1.0 MNFSSSSSSSSQLLSSHVIRSPVLFFNSSVTNLRFSVTNMRRAGIRAASSCNIIPKMNGASDGGGVRDVSKVTVVGDPSSLEDKVAAIRMDGPAKLQVIA DFDATLTKYFVNGRRGESSHGLLRQENPEYDARRQALYDYYHPLEFSHSIPIDEKTKLMEEWWGKTHNLLIEGGLTYDAIKQSVAASGIAFREGVADLFE YLEERDIPVLIFSAGLADIIEEVLRQKIHRPFKNVKIVSNRMEFDSDGRLASFKGKLIHSLNKNEHALDMAGPLHERLGESNGLNDVVSASVKERTNVLL LGDHLGDLRMSDGLDYKTRISAGFLNDNIENNLPGYRKAFDVVYLHDAPMWGVVNLVSQLFPTHSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38680			5'-nucleotidases;magnesium ion...		Lus10008973 [exp]	0	1
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10027400 [exp]	10.2	0.8319
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10036613 [exp]	11.3	0.8363
AT5G02830			Tetratricopeptide repeat (TPR)...		Lus10015053 [exp]	13.6	0.8425
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10040680 [exp]	14.5	0.8318
AT1G54570			Esterase/lipase/thioesterase f...		Lus10018998 [exp]	23.2	0.8048
AT4G38260			Protein of unknown function (D...		Lus10026547 [exp]	26.6	0.7413
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10013713 [exp]	28.4	0.8322
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10037211 [exp]	30.6	0.8135
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10036717 [exp]	30.8	0.8167
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10027521 [exp]	33.9	0.7634

Compare expression of checked genes

Lus10008973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.