Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26140 1068 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT3G52840 1035 / 0 BGAL2 beta-galactosidase 2 (.1) AT5G56870 1024 / 0 BGAL4 beta-galactosidase 4 (.1) AT3G13750 1004 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G36360 932 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT1G45130 920 / 0 BGAL5 beta-galactosidase 5 (.1) AT2G28470 826 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT5G63810 763 / 0 BGAL10 beta-galactosidase 10 (.1) AT2G32810 724 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G20710 677 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028848 [exp] 1466 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10006009 [exp] 1260 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10040557 [exp] 1163 / 0 AT4G26140 1001 / 0.0 beta-galactosidase 12 (.1.2) Lus10000701 [exp] 1004 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 992 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 981 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10041798 [exp] 928 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025980 [exp] 923 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10024292 [exp] 918 / 0 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G144500 [exp] 1104 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.003G038500 [exp] 1033 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 1020 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 946 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 942 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 942 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.009G012400 [exp] 809 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G099800 [exp] 776 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.011G044300 [exp] 761 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.017G057900 [exp] 741 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10008974 pacid=23175143 polypeptide=Lus10008974 locus=Lus10008974.g ID=Lus10008974.BGIv1.0 annot-version=v1.0 ATGTTGAGCCACAGCAGCCTGGCTCTGTTTTCATTACTTCTGTTGCTCTGTTCTTCTTCTTCTCTCTGGGTTTCTCCAGTCACAGCGACGGTCACTTATG ACGGTAAAGCTATCATCGTCAATGGGCAGCGTAGGATTCTCATCGCTGGCTCTATTCACTACCCCAGAAGCACCCCTGAGATGTGGCCTGATCTGATACA GAAGGCCAAAGATGGAGGGCTGGATGTGATCCAGACTTACGTTTTCTGGAACGGCCACGAGCCTTCTCCCGGGAATTATTATTTCGAGGACAGATTCGAC CTGGTGAAGTTCGTCAAGGTGGTTCAACAAGCAGGCCTCTACGTTAATCTCCGAATCGGCCCTTACGCTTGTGCTGAATGGAACTTTGGGTATCCTTTTA AAGTGATCCCTTGCTCTGTTTCCTTCTCTCTGTATTTTTTATGGGTTTTGAACAATGCTCTGTTTTTTGGCCATGGATGCAGAGGATTCCCTGTTTGGCT AAAGTATGTCCCTGGAATGTCTTTCAGAACTGACAATGAACCGTTCAAGGCGGCTATGCAAAAGTTCACTGAGAAAATCGTCAACATGATGAAGCAAGAA CAGCTCTTTGAACCACAGGGAGGCCCAATTATTCTTTCCCAGATAGAGAACGAGTACGGGCCGATAGAATGGGAGCTGAAAGCACCGGGGAAAGCATACG CACAGTGGGCAGCTCAGATGGCGGTGGGACTCAACACAGGAGTTCCATGGATTGCGTGCAAGCAAGAGGATGCCCCTGACCCTCTGGTTCACATCATGGG GGAACCCAGTGCTATACAGACCAGCAGAGGATCAGGCATTTTCGGTTCTCAAGTTCATCCAGAGTGGTGGTTCGTACGCGAATTATTACATGTCACAGCT GCCGTCACTTACGACGGAAAAGCTATCGTCGTCAATGGGCAGCGTAGGATTCTCATCGCTGGCTCTATTCACTACCCCAGAAGTACCCCTGAGATGTGGC CTGATCTGATACAGAAGGCCAAAGATGGAGGCCTGGATGTTATTCAGACTTACGTTTTCTGGAATGGCCACGAGCCTTCTCCTGGGAATTATTATTTCGA GGATAGGTTCGACCTGGTGAAGTTCGTGAAGGTGGTTCAGCAAGCAGGCCTATACGTTAATCTCCGAATCGGTCCTTACGCTTGTGCAGAATGGAACTTT GGAGGATTCCCTGTTTGGCTAAAGTATGTCCCTGGAATGTCTTTCAGAACTGACAATGAACCGTTCAAGGCGGCTATGCAAAAGTTCACAGAGAAAATCG TCAACATGATGAAGCAAGAAGAGCTCTTTGAACCACAGGGAGGCCCAATAATTCTCTCCCAGATAGAGAACGAGTACGGGCCGATAGAATGGGAGCTGAA AGCACCGGGGAAAGCATACGCACAGTGGGCAGCTCAGATGGCGGTGGGACTCAACACAGGAGTTCCATGGATTGCGTGCAAGCAAGAGGATGCCCCTGAC CCTCTGATAGACACCTGCAACGCGTATTACTGCGAGAAATTCACACCAAACAAGTCCTATAAGCCTAAAATGTGGACTGAAGCTTGGACCGCTTGGTTCA CATCATGGGGGAACCCAGTGCTATACAGACCAGCAGAGGATCAGGCATTTTCGGTTCTCAAGTTCATCCAGAGTGGTGGTTCGTACGCGAATTATTACAT GTATCATGGTGGAACGAACTTCGGTAGAACTGCGGGTGGTCCCTTTGTAGCAACCAGCTATGACTACGACGCTCCTCTTGATGAATATGGCTTAACAAAT GACCCCAAGTACACACATCTGAAACACATGCATAAGGCAATCAAGCAAAGCGAGAAGGCTTTAGTTTCTGCTGATGCCACAGTAACATCATTAGGGACAA ATCAAGAGGCTCATGTGTATAGCTCAAGTTCAGGGTGTGCAGCGTTCCTAGCAAACTACGATGTGAGTTACTCGGTGAAAGTGAACTTTGGAAGTGGCCA ATATGATCTCCCAGCTTGGTCTATCAGCATACTGCCTGATTGCAAAACGGAAGTTTACAACACTGCAAAGGTGAGGAGCAGTCAGGAAACCGGAAAGGTT TTAGCTCCAAGAGTGCACAAGAAGATGACTCCTCTGGGCGGATTTACATGGGACTCATACATCGACGAAGTTGCTTCTGGTTTTGCCAGCGATACAACCA CCGAGGATGGGTTGTGGGAGCAGCTATACATGACTAAGGATTCTTCAGATTACCTTTGGTACATGCAAGATGTTAAGATAGGAAGTGATGAAGCATTCTT GACGAATGGAAAAGACCCATTTCTCAATGTCCAATCAGCAGGACATTTTTTGAATGTTTTCGTCAATGGAAAACTCATCGGTAGCGCTTATGGCAGCAAT GACAATCCTAAGTTGACCTTCAGCCAGAGTGTGAAGCTAAATGTTGGTGTTAACAAGATTGCGTTATTGAGCGCCTCTGTTGGTCTTGCGAATGTTGGCT TACACTTCGAAAACTACAATGTTGGAGTTCTTGGACCAGTAACATTGACCGGATTGAATCAGGGGACAGTTGACATGACAAAATGGAAATGGTCTTACAA GGTTGGTGTACAAGGTGAAAAATTGCAGCTTAATACTGTTGCTGGAAGTTCATCTGTTGAATGGGTAAAGGGGTCGATGTTAGCTAAAAAGCAGCCATTA ACATGGTACAAGTCAACTTTCAATGCCCCGGAAGGGAATGATCCAGTAGCTCTGGACATGATCAGCATGGGAAAGGGCCAGATATGGATTAATGGTCAGG GCATAGGGCGTTACTGGCCGGCATATACTGCACAAGGTAACTGCGGTGGCTGTTCTTACGGCGGATATTTCACTGAGAAGAAATGTCTCACTGGTTGTGG ACAGCCTACACAAAGATGGTACCATGTTCCGCGGTCATGGCTGAAACCAACAGGGAACTTACTGGTTGTGTTTGAAGAATGGGGAGGAGATCCCACTGGA ATTTCTATGGTGAAAAGAACTTTGCCGGGAATGTGA
AA sequence Show only first row Show all	>Lus10008974 pacid=23175143 polypeptide=Lus10008974 locus=Lus10008974.g ID=Lus10008974.BGIv1.0 annot-version=v1.0 MLSHSSLALFSLLLLLCSSSSLWVSPVTATVTYDGKAIIVNGQRRILIAGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRFD LVKFVKVVQQAGLYVNLRIGPYACAEWNFGYPFKVIPCSVSFSLYFLWVLNNALFFGHGCRGFPVWLKYVPGMSFRTDNEPFKAAMQKFTEKIVNMMKQE QLFEPQGGPIILSQIENEYGPIEWELKAPGKAYAQWAAQMAVGLNTGVPWIACKQEDAPDPLVHIMGEPSAIQTSRGSGIFGSQVHPEWWFVRELLHVTA AVTYDGKAIVVNGQRRILIAGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRFDLVKFVKVVQQAGLYVNLRIGPYACAEWNF GGFPVWLKYVPGMSFRTDNEPFKAAMQKFTEKIVNMMKQEELFEPQGGPIILSQIENEYGPIEWELKAPGKAYAQWAAQMAVGLNTGVPWIACKQEDAPD PLIDTCNAYYCEKFTPNKSYKPKMWTEAWTAWFTSWGNPVLYRPAEDQAFSVLKFIQSGGSYANYYMYHGGTNFGRTAGGPFVATSYDYDAPLDEYGLTN DPKYTHLKHMHKAIKQSEKALVSADATVTSLGTNQEAHVYSSSSGCAAFLANYDVSYSVKVNFGSGQYDLPAWSISILPDCKTEVYNTAKVRSSQETGKV LAPRVHKKMTPLGGFTWDSYIDEVASGFASDTTTEDGLWEQLYMTKDSSDYLWYMQDVKIGSDEAFLTNGKDPFLNVQSAGHFLNVFVNGKLIGSAYGSN DNPKLTFSQSVKLNVGVNKIALLSASVGLANVGLHFENYNVGVLGPVTLTGLNQGTVDMTKWKWSYKVGVQGEKLQLNTVAGSSSVEWVKGSMLAKKQPL TWYKSTFNAPEGNDPVALDMISMGKGQIWINGQGIGRYWPAYTAQGNCGGCSYGGYFTEKKCLTGCGQPTQRWYHVPRSWLKPTGNLLVVFEEWGGDPTG ISMVKRTLPGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	0	1
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	1.4	0.9878
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	1.7	0.9800
AT3G54100			O-fucosyltransferase family pr...		Lus10035540 [exp]	2.0	0.9832
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Lus10033283 [exp]	2.2	0.9762
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Lus10022289 [exp]	3.5	0.9515
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	3.5	0.9772
AT4G16970			Protein kinase superfamily pro...		Lus10040153 [exp]	4.0	0.9674
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	4.2	0.9743
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10021412 [exp]	4.7	0.9536
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	5.9	0.9723

Compare expression of checked genes

Lus10008974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.