Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40190 188 / 6e-59 LEW3 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) AT1G78800 52 / 1e-08 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007500 [exp] 204 / 8e-65 AT2G40190 745 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10028977 [exp] 203 / 1e-64 AT2G40190 751 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10010207 [exp] 112 / 3e-33 AT2G40190 111 / 6e-30 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10014773 [exp] 80 / 2e-18 AT2G40190 188 / 1e-55 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10037008 [exp] 52 / 8e-09 AT1G78800 665 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10015797 [exp] 50 / 5e-08 AT1G78800 652 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095500 [exp] 174 / 1e-53 AT2G40190 735 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Potri.015G093000 [exp] 142 / 5e-44 AT2G40190 248 / 2e-81 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Potri.011G109000 [exp] 53 / 6e-09 AT1G78800 663 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10008975 pacid=23175178 polypeptide=Lus10008975 locus=Lus10008976.g ID=Lus10008975.BGIv1.0 annot-version=v1.0 ATGTACAGGGACTTGATAAAGCTACTGGGAAGTGCCGTTGCAGGATTACATTCTATGATAGACGAGCACTTTGGCATCAGTGTTGTTGAATACATGGCTG CAGGAGCCATACCAATAGCTCATAACTCCACGGGTCCTAAAATGGGCATTGTGCTAGAAGAAGACGGGGAGCCGACAGGGTTCCTTGCAGAGACAGTTGA AGAGTTTGCAGACGCGATCCTCAAGGTGGTCAAGATGCCGGAACCCGGGAGGCTCAAGATGGCTGCTGACGCCAGGAGAAGGGCCGGCAAGTTTTCGGAA CAAAGGTTTTACGAGAATCTCAAAACTTCCATTCGACCTGTACTAGTACCAAGTGTTTCTTCCACCAATACCAGATAA
AA sequence Show only first row Show all	>Lus10008975 pacid=23175178 polypeptide=Lus10008975 locus=Lus10008976.g ID=Lus10008975.BGIv1.0 annot-version=v1.0 MYRDLIKLLGSAVAGLHSMIDEHFGISVVEYMAAGAIPIAHNSTGPKMGIVLEEDGEPTGFLAETVEEFADAILKVVKMPEPGRLKMAADARRRAGKFSE QRFYENLKTSIRPVLVPSVSSTNTR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10008975 [exp]	0	1
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10017004 [exp]	3.2	0.7887
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10021328 [exp]	4.9	0.7697
AT5G43680			unknown protein		Lus10004356 [exp]	12.4	0.7622
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10032363 [exp]	13.2	0.7226
AT2G04940			scramblase-related (.1)		Lus10010075 [exp]	15.1	0.7614
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10014175 [exp]	17.8	0.7685
AT3G02100			UDP-Glycosyltransferase superf...		Lus10021163 [exp]	18.0	0.7442
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10003329 [exp]	18.1	0.7547
AT3G13600			calmodulin-binding family prot...		Lus10025173 [exp]	20.1	0.7122
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042936 [exp]	20.5	0.7561

Compare expression of checked genes

Lus10008975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.