Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40190 191 / 2e-59 LEW3 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028977 [exp] 226 / 2e-72 AT2G40190 751 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10007500 [exp] 226 / 3e-72 AT2G40190 745 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10014773 [exp] 119 / 1e-32 AT2G40190 188 / 1e-55 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10007909 [exp] 57 / 1e-10 AT2G40190 152 / 3e-45 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10031614 [exp] 54 / 8e-10 AT2G40190 81 / 1e-20 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10007501 [exp] 54 / 2e-09 AT2G40190 103 / 2e-26 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095500 [exp] 209 / 3e-66 AT2G40190 735 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Potri.015G093000 [exp] 97 / 1e-25 AT2G40190 248 / 2e-81 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10008976 pacid=23175177 polypeptide=Lus10008976 locus=Lus10008976.g ID=Lus10008976.BGIv1.0 annot-version=v1.0 ATGGCGACCATCACTCTCCTCATTCTGTCTCTTCTCAGCTCTCTCATCTTCTCCATCTCCTCCTTCATCGTCTTCCACGTACTCACCTCCCCCCGGAACT GCCAGAAATCCGTTGGTTTCTTCCACTCTTACACAAACGACGGCGGCGGCGGCGGCGGCGAACGCGTCTTATGGTGCGCGTCTTTGGATATGGTAAACTC TTTCTGGACTCGATCGCACATCGAGAAGCTTTGGTGTATTCCTAACAGGATCAAACGAGTCTATCCTCCTTGTGATACATCAGGGCTACAGGTGCTTCCT CTGGATAGACCAGCGGGAACTCCAGTGTTTATATCAGTAGCTCAGTTCCGTCCTGAGAAGGCGCATCCTCTGCAACTTGAAGCCTTCTCTCTTGCCCTTG CGAGGTTGGATGCCGAGCTGCCAAGGCCAAAGCTCCAGTTTGTGGGTAGTTGTAGGAACAAAGCAGACGAGGAGAGATTGCAGAACTTGAAAGATAAAGC AATTGAGCTGAAGATAGATGGAGATGTGAAAAGAATGTGA
AA sequence Show only first row Show all	>Lus10008976 pacid=23175177 polypeptide=Lus10008976 locus=Lus10008976.g ID=Lus10008976.BGIv1.0 annot-version=v1.0 MATITLLILSLLSSLIFSISSFIVFHVLTSPRNCQKSVGFFHSYTNDGGGGGGERVLWCASLDMVNSFWTRSHIEKLWCIPNRIKRVYPPCDTSGLQVLP LDRPAGTPVFISVAQFRPEKAHPLQLEAFSLALARLDAELPRPKLQFVGSCRNKADEERLQNLKDKAIELKIDGDVKRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10008976 [exp]	0	1
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10024071 [exp]	15.2	0.7390
AT5G11090			serine-rich protein-related (....		Lus10008811 [exp]	25.0	0.6092
AT5G59700			Protein kinase superfamily pro...		Lus10020474 [exp]	27.7	0.6890
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024891 [exp]	28.1	0.7092
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10018153 [exp]	30.6	0.6933
AT1G54070			Dormancy/auxin associated fami...		Lus10013180 [exp]	35.1	0.6669
AT4G13340		LRX3	leucine-rich repeat/extensin 3...		Lus10037905 [exp]	44.6	0.6793
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10000250 [exp]	49.5	0.6890
					Lus10001257 [exp]	55.3	0.6789
					Lus10032433 [exp]	58.3	0.6710

Compare expression of checked genes

Lus10008976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.