Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24940 473 / 1e-168 ATSAE1A, AT-SAE1-1, SAE1A SUMO-activating enzyme 1A (.1) AT5G50580 465 / 2e-165 AT-SAE1-2, SAE1B SUMO-activating enzyme 1B (.1.2) AT5G50680 465 / 2e-165 ATSAE1B ARABIDOPSIS THALIANA SUMO ACTIVATING ENZYME 1B, SUMO activating enzyme 1B (.1.2) AT2G30110 86 / 5e-18 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT5G06460 82 / 1e-16 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT1G05180 68 / 3e-12 AXR1 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G32410 66 / 8e-12 AXL1, AXL AXR1- like 1, AXR1-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028846 [exp] 652 / 0 AT4G24940 475 / 7e-170 SUMO-activating enzyme 1A (.1) Lus10031292 [exp] 84 / 3e-17 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10012507 [exp] 84 / 3e-17 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10022666 [exp] 83 / 4e-17 AT2G30110 768 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10031862 [exp] 77 / 4e-15 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10015115 [exp] 69 / 2e-12 AT1G05180 860 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031562 [exp] 54 / 1e-07 AT1G05180 778 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G100800 [exp] 519 / 0 AT4G24940 490 / 4e-176 SUMO-activating enzyme 1A (.1) Potri.015G099000 [exp] 509 / 0 AT4G24940 498 / 4e-179 SUMO-activating enzyme 1A (.1) Potri.009G075700 [exp] 85 / 1e-17 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G280600 [exp] 82 / 1e-16 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075800 [exp] 81 / 2e-16 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.014G153500 [exp] 71 / 4e-13 AT1G05180 873 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.002G229100 [exp] 70 / 6e-13 AT1G05180 884 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00899 [flax] [poplar] ThiF ThiF family
Representative CDS sequence Show only first row Show all	>Lus10008977 pacid=23175146 polypeptide=Lus10008977 locus=Lus10008977.g ID=Lus10008977.BGIv1.0 annot-version=v1.0 ATGACGCCACCTATCACCGGCCGGTATCTCTATCTCCATCAGGCGTCCATCAACCAACAACAACTCGATTACACGAACTCGAAGGCCGAAGCAGCTGCTC TGATGGACGGTGAGCAGCTGACGGAGCAGGAAACTGCTCTGTACGACCGCCAAATTCGAGTTTGGGGAGCTGATGCCCAGCGAAGACTAAGCAAGTCTCA CATACTAGTCTATGGGATGAAAGGTACTATTGCTGAGTTTTGCAAGAACATTGTATTGGCTGGAGTTGGTAGTGTAACTTTGATGGATGATCGGGCTGTG ACGGAAGAAGCATTAGCGTCCAACTTTCTTATACCACGTGATGAGAACGTTTACAGTGGAAGGTCACTTGCTGAGCTTTGTTGCGATTCTTTGAAGGAGT TCAATCCTATGGTCCGTGTTTCGGTTGAAAAAGGTGACTTGGTAACAATGGGTTTCCAGTTCTTTGAAAAGTTTGATGTTATTGTCATTAGTTGCTGCCC TCTTGCCACCAAAATATTGGTCAATGAAAAATGCAGGAAGTTAGCCAAGCGTATAGCTTTTTATACAGTCGAATGTAGAGATTCTTGTGGAGAGATTTTC GTGGACTTGCAAAACTATAAGTATATGAAGAAAGCAAAAGCAGATGGATTGGCTGCTGAATATGAAATACCGTATCCAAGCTTTCAGGAAGCCATTAATG CACCTTGGGGATCACTTCATAGAAAAACGTCGAAGCTTTACTTTGCCATGAGAGTGATTGAAAGGTTTGAAGAAGCTAACAATCGAAATCCTGGAAATTT ATCGAGCGAGGATGTTCCTGCTGTTCTACAGTTTAAAAGGCAACTCTGCGAGGCACAGTCAGTGAGTGAAGCACTGGTCCCTGATACTCTGCTTGAGAGA TTGGTGATGGGTTCAATAGAATTCCCACCAGTTTGCGCCATCGTTGGAGGAATCCTTGGACAGGAGGTAATCAAAGCTATATCAGGCAAAGGGGACCCTC TCAAGAATTTTTTCTACTTTGATGTTGTGGATGGGAAAGGTGTGATCGAAGACATATCAACTATGGCGCCAGAAACAGAACCCGCTGCCGCTGTTCCTCC GACGATTTTGGAACTGTAG
AA sequence Show only first row Show all	>Lus10008977 pacid=23175146 polypeptide=Lus10008977 locus=Lus10008977.g ID=Lus10008977.BGIv1.0 annot-version=v1.0 MTPPITGRYLYLHQASINQQQLDYTNSKAEAAALMDGEQLTEQETALYDRQIRVWGADAQRRLSKSHILVYGMKGTIAEFCKNIVLAGVGSVTLMDDRAV TEEALASNFLIPRDENVYSGRSLAELCCDSLKEFNPMVRVSVEKGDLVTMGFQFFEKFDVIVISCCPLATKILVNEKCRKLAKRIAFYTVECRDSCGEIF VDLQNYKYMKKAKADGLAAEYEIPYPSFQEAINAPWGSLHRKTSKLYFAMRVIERFEEANNRNPGNLSSEDVPAVLQFKRQLCEAQSVSEALVPDTLLER LVMGSIEFPPVCAIVGGILGQEVIKAISGKGDPLKNFFYFDVVDGKGVIEDISTMAPETEPAAAVPPTILEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10008977 [exp]	0	1
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10022337 [exp]	2.4	0.9131
AT3G51270			protein serine/threonine kinas...		Lus10013682 [exp]	2.8	0.9184
AT4G31460			Ribosomal L28 family (.1)		Lus10013249 [exp]	4.2	0.9025
AT3G25940			TFIIB zinc-binding protein (.1...		Lus10015458 [exp]	10.1	0.8976
AT5G14290			Mitochondrial ribosomal protei...		Lus10041583 [exp]	10.2	0.8961
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10039845 [exp]	10.5	0.9000
					Lus10005797 [exp]	10.7	0.8819
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10041586 [exp]	11.2	0.8929
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10041295 [exp]	11.7	0.9017
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Lus10015968 [exp]	14.0	0.8889

Compare expression of checked genes

Lus10008977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.