Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47670 134 / 2e-39 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) AT1G21970 131 / 4e-38 CCAAT AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1) AT2G38880 121 / 2e-35 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT2G37060 119 / 4e-34 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT5G47640 119 / 5e-34 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT4G14540 117 / 1e-33 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT3G53340 115 / 2e-32 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT2G47810 111 / 2e-31 CCAAT NF-YB5 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) AT2G13570 112 / 8e-31 CCAAT NF-YB7 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) AT1G09030 101 / 2e-27 CCAAT NF-YB4 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028845 [exp] 155 / 5e-47 AT5G47670 188 / 6e-60 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10008978 [exp] 150 / 5e-46 AT5G47670 147 / 1e-44 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10008981 [exp] 148 / 7e-44 AT5G47670 193 / 5e-61 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10008980 [exp] 139 / 6e-41 AT5G47670 168 / 6e-52 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10003909 [exp] 134 / 3e-39 AT5G47670 221 / 1e-72 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10001914 [exp] 132 / 3e-38 AT5G47670 218 / 2e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10023484 [exp] 119 / 3e-34 AT2G37060 211 / 9e-71 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10022514 [exp] 119 / 6e-34 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10016616 [exp] 119 / 8e-34 AT4G14540 215 / 5e-72 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G005000 [exp] 132 / 1e-38 AT5G47670 216 / 7e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Potri.016G005600 [exp] 131 / 4e-38 AT5G47670 216 / 6e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Potri.005G083400 [exp] 125 / 6e-36 AT4G14540 190 / 1e-61 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.001G367500 [exp] 122 / 1e-35 AT4G14540 210 / 2e-70 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.007G082200 [exp] 123 / 3e-35 AT4G14540 186 / 5e-60 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.008G044800 [exp] 121 / 6e-35 AT2G37060 245 / 3e-84 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.010G216600 [exp] 120 / 2e-34 AT2G37060 236 / 2e-80 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.016G085000 [exp] 118 / 7e-34 AT3G53340 247 / 1e-84 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) Potri.016G006100 [exp] 119 / 8e-34 AT4G14540 212 / 8e-71 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.014G167800 [exp] 118 / 1e-33 AT4G14540 221 / 1e-74 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10008979 pacid=23175179 polypeptide=Lus10008979 locus=Lus10008979.g ID=Lus10008979.BGIv1.0 annot-version=v1.0 ATGCCTCGACCGCAAGACGAGTACATACCACTAGCCACCATCACCAGGGTCATGCGGAGCATCCTCCCGCCCCGCACCAAAATCTCCGAGGAGGTCAAGG AGACCATCCAGAAGGCTGTGTCGGAGTATATCAGCATCGTCACCGTGGAGGCCAACGAGCACTGCCGGCACGACCAAAGGAGGACCGTCACTGCTGAAGA CGTCCTCTGGGCCATGGACAGGCTAGGATTTGACAACTACGTCGAGACGCTCTCCTTGTACCTCACCAGGTACCGTGAGAGCGAAGGTCACCCTTCTGCG CCTTCCCGTGACCCTAACCCTACCCCGCCGCTCAACCCAACTGCTCAGCATCATGAGGATTTTAGGCCCACCCCGCTGATGCCACCTAGTCCCCTGGCCC TTACTCTGGCCCTTACTCTGGCCCCACCTCTGCAGCAGCAGGGTCCTAATAGTAATTTCCAGATGCATCAGGGCGATCCGTTGTTGTTGAGGTTGGGGTT GGGTCAGGGGAACGGTAGTGGTGGTGGTGGTGAAGATATCGGAGGGAGTACTTCCGATCAGAATGGGGCCCAGCTTTGA
AA sequence Show only first row Show all	>Lus10008979 pacid=23175179 polypeptide=Lus10008979 locus=Lus10008979.g ID=Lus10008979.BGIv1.0 annot-version=v1.0 MPRPQDEYIPLATITRVMRSILPPRTKISEEVKETIQKAVSEYISIVTVEANEHCRHDQRRTVTAEDVLWAMDRLGFDNYVETLSLYLTRYRESEGHPSA PSRDPNPTPPLNPTAQHHEDFRPTPLMPPSPLALTLALTLAPPLQQQGPNSNFQMHQGDPLLLRLGLGQGNGSGGGGEDIGGSTSDQNGAQL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10008979 [exp]	0	1
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10010475 [exp]	1.4	0.9152
					Lus10012045 [exp]	2.0	0.8954
AT3G23550			MATE efflux family protein (.1...		Lus10012960 [exp]	13.9	0.8129
AT4G31880			unknown protein		Lus10026078 [exp]	21.4	0.7520
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10034370 [exp]	31.1	0.7223
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10027943 [exp]	33.3	0.7199
AT2G02340		ATPP2-B8	phloem protein 2-B8 (.1)		Lus10025662 [exp]	35.9	0.7196
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	38.4	0.7196
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	40.7	0.7196
AT5G52605			Defensin-like (DEFL) family pr...		Lus10031095 [exp]	41.0	0.6823

Compare expression of checked genes

Lus10008979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.