Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53150 478 / 5e-160 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G25560 464 / 2e-155 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05230 354 / 2e-112 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 354 / 2e-112 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37380 258 / 7e-79 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT3G06340 264 / 1e-78 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT5G35753 233 / 5e-68 Domain of unknown function (DUF3444) (.1) AT5G37440 166 / 3e-46 Chaperone DnaJ-domain superfamily protein (.1) AT5G50115 169 / 1e-45 unknown protein AT5G37750 162 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028842 [exp] 1286 / 0 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 509 / 7e-173 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 493 / 2e-166 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 268 / 2e-77 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036769 [exp] 268 / 2e-77 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001726 [exp] 258 / 2e-74 AT5G27240 315 / 9e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012334 [exp] 241 / 2e-69 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10006380 [exp] 236 / 1e-67 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10004129 [exp] 224 / 8e-62 AT5G27240 265 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G057200 [exp] 769 / 0 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 728 / 0 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 597 / 0 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 567 / 0 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 556 / 0 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 543 / 0 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 444 / 3e-147 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 437 / 3e-144 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 292 / 6e-86 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 285 / 4e-84 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF11926 [flax] [poplar] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Lus10008983 pacid=23175125 polypeptide=Lus10008983 locus=Lus10008983.g ID=Lus10008983.BGIv1.0 annot-version=v1.0 ATGGAATGCAATAAAGATGAGGCAGCTAGAGCGAAGGAGATTGCCGAGAAGAAATTTTTGGAGAAGGACTTTGTTGGTGCACGGAAATTTGCACTGAAGG CCCAGAACTTGTATCCTGAGCTTGAAGATATTTCCCAAATGATAGCATCACTCAATGTCTATATTTCTTCGGAGACCAAAGTGAATGGAGAAGAAGATTG GTACGGGATACTTGGAGTTCACCCACTTGCTGATGATGACATGGTCCGAAAACAGTACCGGAAATTGGCTTTGATGCTTCATCCTGACAAAAATAAGTCA GTTGGAGCCGATGGGGCTTTTAAACTTGTTTCCATGGCATGGAGTTCTTTATCTGACAAAACAAAGAGACTAACATATGACCAGAAGCGAAAGAGTCACA TTTTCTGGAATGTCTCCAGTTCTGGTAACGGGACGACAGCAACTAAGCCTGGTTCCACCAAAGCAGCTGCGAAGAATAAGGGTGTTCCTCGAACCGGTCA TTCTTCCACTGCAGCTTCATCTCAGAGGTTGAAGCCGAATACTTTTTGGACTGTTTGCCAGCAGTGCAAGATGCAGTATGAGTACCTTAGAGTTTATTTG AATCATAATCTCCTCTGCCCCAATTGTCATGAGCCATTTATAGCTACTGAAACAGCTCCTCCGTCTTCACATGGCTATAAATCGGCAACACAATGGAATT TTTCCCAGCAATCACAAAAACCAAATGCTCAAGCTTCTAGTAGAAATGCAACGAAATCTAATAATAAAGGTAGACCTTCGAATGGAGGAACCAACTTCCA ATGGACTCCATTCTCCGGATCAGGTACTACTTCATATGCTGCTCGAGCTGCAAGTGTAGTTCAGCAGGCATATGAAAAGGTGAAGAGGGATCGGGAAGAA GCGCAGGCAGCCACGAGAAGAGACGAGACTCTTAAAAGGAAAAGTAATGCTTCCAAAAGAACGGGGAAGAGAAGGAGAAGCATGGGAGATGGTGGTTTAA ATAACAACAAAAATTCTGTTAATAAACATATGGGTTCAACTTCCGGAAGAGATGGCACAACTAGTGTTGCTGGTGTCACTAAGCTTTCTGGCTTCGGAGC TCCCACTCAGGTTGATATTCAGTCCCTTCTGGTGGATAAGGGGAAGATTGCAGTCAGTAAGAAACTCGATGAGTTGAATTCAAGCACTTCGATTGATTTG TTGGTGGCAAATGGCAACTCAACTGAACAGAGCTTACCTGGTGGTCCATCCAATCCAGAAGAGAGGTTGTGCGAGACTGATATTTCTCCTGTTACAATGT TCATTGATGTGCTAGATCCAGAGTTCCATAACTTTGACAAGGATAGAACTGAGACATGTTTTGGAGAAAACCAAGTATGGGCAGCCTATGATTTTGGCGA GGGATTCCCTCGGCACTATGCTATGATTAACGAGGTGATTTCTCTGGATCCATTGAAGTTGAGGATTAGTTGGCTCAACCCAAAAGCTAATAGCGATTTT GACCCACTGGATTGGTTTTGTTCCAGCTTCTCGAAAAGCTTCGGTGAATTTCAAGTAGGAAGGCGCGAGATTTATAGGTCCCTCTATTGTTTTTCTCACA AGGTTAGGTGGACAAGAGGAATCCGTGGGTCAGTTCATATATATCCCAGGAAAGGTGAGGTTTGGGCTCTGTACAGAAACTGGTCCCCCGATTGGAACGA GCTGACGGCAGATGAGGTCATAAGGAAGTATGACATGGTGGAAGTTCTTGATGACTATGATGAAGAGCGAGGGGTCGTTGTTGTTCCCCTGGTAAAAGTT GCTGGTTTCAGAACTCTGTTTCGGCAACATTTAGATGTGGGGGAGATCAGAAGAATTCCAAGAGAAGAGATGTTCAGATTTTCGCACCTTGTTCCGTCTT ACATGCTTACTGGTCAAGAAGGTTTAGACTGTCCAAAAGGTTGTAGGGAATTGGACCCAGCAGCCACACCGGTTGAATTTCTTCATGTCGTTATAGATGT GAGAAAGGAGGATTTTTTGGAGATCGAGACCGAGGCAGAGAATGTCGAATAA
AA sequence Show only first row Show all	>Lus10008983 pacid=23175125 polypeptide=Lus10008983 locus=Lus10008983.g ID=Lus10008983.BGIv1.0 annot-version=v1.0 MECNKDEAARAKEIAEKKFLEKDFVGARKFALKAQNLYPELEDISQMIASLNVYISSETKVNGEEDWYGILGVHPLADDDMVRKQYRKLALMLHPDKNKS VGADGAFKLVSMAWSSLSDKTKRLTYDQKRKSHIFWNVSSSGNGTTATKPGSTKAAAKNKGVPRTGHSSTAASSQRLKPNTFWTVCQQCKMQYEYLRVYL NHNLLCPNCHEPFIATETAPPSSHGYKSATQWNFSQQSQKPNAQASSRNATKSNNKGRPSNGGTNFQWTPFSGSGTTSYAARAASVVQQAYEKVKRDREE AQAATRRDETLKRKSNASKRTGKRRRSMGDGGLNNNKNSVNKHMGSTSGRDGTTSVAGVTKLSGFGAPTQVDIQSLLVDKGKIAVSKKLDELNSSTSIDL LVANGNSTEQSLPGGPSNPEERLCETDISPVTMFIDVLDPEFHNFDKDRTETCFGENQVWAAYDFGEGFPRHYAMINEVISLDPLKLRISWLNPKANSDF DPLDWFCSSFSKSFGEFQVGRREIYRSLYCFSHKVRWTRGIRGSVHIYPRKGEVWALYRNWSPDWNELTADEVIRKYDMVEVLDDYDEERGVVVVPLVKV AGFRTLFRQHLDVGEIRRIPREEMFRFSHLVPSYMLTGQEGLDCPKGCRELDPAATPVEFLHVVIDVRKEDFLEIETEAENVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10008983 [exp]	0	1
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Lus10025531 [exp]	1.7	0.9141
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014548 [exp]	2.0	0.9410
AT4G32620			Enhancer of polycomb-like tran...		Lus10041252 [exp]	4.0	0.9250
AT5G20300		Toc90	translocon at the outer envelo...		Lus10006471 [exp]	4.2	0.8949
AT4G26450		WIP1	unknown protein		Lus10027096 [exp]	5.7	0.8956
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10019481 [exp]	9.2	0.8787
AT1G12530			unknown protein		Lus10007047 [exp]	9.2	0.8189
AT5G20300		Toc90	translocon at the outer envelo...		Lus10027712 [exp]	9.4	0.8615
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10005319 [exp]	10.2	0.8657
AT1G27170			transmembrane receptors;ATP bi...		Lus10004905 [exp]	11.7	0.8402

Compare expression of checked genes

Lus10008983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.