Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36380 1866 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G66950 1859 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT1G15520 1573 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT3G16340 1514 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G15210 1501 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT1G59870 1498 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT2G26910 1477 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT2G29940 1419 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT3G53480 1343 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) AT2G37280 1310 / 0 ABCG33, PDR5, ATPDR5 ATP-binding cassette G33, pleiotropic drug resistance 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028841 [exp] 1773 / 0 AT1G66950 1374 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10006277 [exp] 1615 / 0 AT1G66950 1791 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10041668 [exp] 1608 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 1594 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10020568 [exp] 1573 / 0 AT1G66950 1761 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10014384 [exp] 1573 / 0 AT1G66950 1917 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10034020 [exp] 1572 / 0 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 1571 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 1566 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024400 [exp] 2008 / 0 AT1G66950 2011 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.006G115000 [exp] 1902 / 0 AT1G66950 2148 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.003G183200 [exp] 1645 / 0 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 1638 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 1635 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 1627 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.009G147100 [exp] 1618 / 0 AT2G36380 1759 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Potri.001G048900 [exp] 1616 / 0 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.018G032900 [exp] 1615 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 1615 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0181 [flax] [poplar] PF08370 [flax] [poplar] PDR_assoc Plant PDR ABC transporter associated CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10008984 pacid=23175160 polypeptide=Lus10008984 locus=Lus10008984.g ID=Lus10008984.BGIv1.0 annot-version=v1.0 ATGGCCCACAGTAGCGGCGGAGGAAGTGGCTCGACGTCGTTGAGGTGGACTGGAAGCAATCTCCCGCCGAAGAGCTTGAAGCAGGCGCTAGGCAGCAGCG GAGGAGGTGGGTATTTCGAGTTTCAGAGGAGTTTGACGGAGGACGACGAGGACGATCTGAAATGGGCGGCGATCGAGCGGCTCCCGACTTACGACAGGCT CAGGAAAGGAATCCTGAAGCAGGTGGTGGCGGGTGCGGGGGCAAACGACGACGATGTTCCGTTTCAGGAAATTGACGTTTCAAATCTGAGAGTCGGCGAG AGGAAGATTCTGATGGAGAGTCTGCTCAAGGTTGCTGAGGTGGATAACGAGAAGTTGCTGCGTAGGATTAGACAGAGGACTGATGATGTCGGGATTACGA TCCCGACTGTCGAGATTAGGTTCGAATCTCTGTCGGTCGAAGGCGATGGGTATGTCGGCACCAGGGCGCTTCCGACTCTGGCGAATTTCGCGGTCAACGT TGCGGAGGAAATTCTTGGCTTCTTCCGAATTTTCCCTTCCAAGAAAAGGGTTGTGAAAATTCTTCATGGAATAAGCGGAATTGTAAAGCCGTCGAGAATG ACTCTGCTTCTGGGACCTCCAGGATCAGGAAAAACTACACTTTTGAAGACACTTTCAGGGAAAATGGACAAGAACTTAAGGGTGTCAGGAAGAGTGACTT ACTGCGGGCACGAATTCGACGAGTTTGTACCGCAGAGAACTTGTGCTTACATCAGCCAGCATGATTGTCACGTTGCAGAAATAACCGTCAGGGAGACCAT GGAATTCTCAGGGCGATGCTTGGGGGTCGGTAACAAGTACGATTTGCTGGCCGAGCTTTCGAGAAGAGAGAAAGTAGCTGGAATCAAACCTGACCTGGAG ATTGACGCATTCATGAAAGCTACATCGTTTTCTGGACAGGAAAACTCCTTAGTCGTTGATTATGTCATCAAGCTTCTCGGACTGGACATCTGCGCAGATA TTATTGTTGGAGATGACATGAGAAGAGGAATCTCTGGTGGCCAGAAAAAGCGTGTCACTACAGGGGAGATGCTGGTCGGACCGGCAAAAGTGTTTCTGAT GGACGAAATATCAACCGGGCTTGACAGTTCAACAACTTACCAGATTATCAGGTTTATGAAGGAAATGGTTCACATCATGGATGTCACAATGATCATCTCC CTCCTCCAGCCTGCACCGGAGACGTTCGAACTCTTCGATGATGTCATCTTGATATCGGAAGGCCATATTGTTTACCAAGGGCCCAGGGAGAATGTTCTCA ACTTCTTCGAAAGTGTCGGATTCAAATGTCCAGAAAGGAAAGGTTTGGCAGACTTCTTACAGGAAGTAACCTCGAAGAACGACCAAGAACAGTACTGGTC TCGAACGGACGAACCTTATAAATACATCTCCGTACTAGAGTTTGTCGCATACTTCAGCTCATATTCCACCGGTATAAATCTTTCGGAGGAGCTTCGAGTA CCTTACGACAGAAACAGTGTCCACCCTGCTGCACTGGTGAAGGAAAAATACGGAATCTCGAACAAGGAACTGCTGAAAGCGTGTTTTGCAAGGGAGTTGC TGCTGCTAAAAAGGAATGCTTTCATTTATATCTTCAAGATCACGCAACTCACGATCATGTCTATAATCAGCATGACGGTGTTCTTCAGGACAGAGATGAA GGTTGGCCGTTTGGAAGATGGAAGCAAGTTCTACGGCGCAATGTTCTATAGCCTTTTGAACATCATGTTCAATGGAGCATCTGAAGTTGTATTGACTACA AAAAGGCTTCCTCAATTCTACAAGCAGAGGGATTTCTTGTTCTTTCCAGCATGGGCTTTTGCATTGCCAGTCTGGGTACTGAGGATCCCGATTTCGTTCA TCGAGTCGTTCATATGGATCGCCTTAACCTATTACACCATTGGGTTTGCTCCTGCAGCAAGCAGGTTCTTCAAGCAATTACTTGCATTCGTGGCTATCAG CCAGATGGCTCAGGGTCTATTCCGATTCCTCGCTTCAATAGCAAGATCAGATGTGCTAGCACCAGTATTCACTATGTTCTCATTGTTGGTCGTTTTCGTC ATGGGTGGATTCGTTATTTCAAAAGACGACATTCAATCATGGATGATCTGGGTCTACTACATTTCTCCAATGATGTATGGACAAAATGCTATTGTCATCA ATGAATTTCTTGACGATAGATGGAGTGCTCCGAATCCTGACCCTAGGATTCCGGAGCCAACTGTTGGAAGGGCATTACTGCGAGTGAGAGGCATGTTCGT AGAAAACAAATGGTATTGGATATCAATCGGGACACTCATCGGATTGGCACTGCTCTATAACATTTTATTTGTGTTTGCCTTGACTTACTTGGATCCTCTT AAAGGCAATACATCTGTAGTATTGGATGAGAAGGAGAAAAGTAAGTCATTATCCAAGGATGGAAAAACAAGCTCAACTACCATTCAAATGTCCTCGGAAA CATCATGTACACCGATGAAAGGCTCGGATGAAATATCTCAAAGAAAGGGAATGGTGTTGCCCTTCCAGCCTTTGTCATTGGCATTCAGCCATGTCAACTA CTATGTGGACATGCCGGCGGAAATGAAATCCCAAGGAGTTGAAGGTGAACGACTGCAACTGCTACATGATGTCAGCGGTGCTTTTAGGCCGGGTGTTTTG ACAGCATTAGTAGGAGTCAGTGGTGCTGGAAAAACCACCTTGATGGATGTTTTAGCGGGAAGGAAAACCGGAGGCCAGATTGAAGGAACCATCAACGTAT CTGGCTATCTGAAGAACCAACAAACATTTGCTCGAATCAGCGGTTACTGTGAGCAGAACGATATCCACAGTCCGCGGATTACTGTTTATGAGTCCCTCTT GCACTCTGCTTGGCTTCGCCTTCCGAAAAATGTCAACAAGCAAGATAGACAGATGTTCATTGAAGAAGTCATGGAGTTGGTTGAGCTAGGTCCCTTGAGG AACTCCATAGTAGGTCTTCCAGGAGTAGATGGTTTGTCAACTGAACAGAGGAAGAGACTCACCATTGCGGTGGAACTCGTTGCGAATCCTTCCATAATCT TCATGGATGAGCCTACATCTGGTCTCGATGCTCGAGCTGCTGCAATTGTTATGCGCACAGTTCGAAACACAGTCGACACAGGAAGAACTGTTGTCTGCAC CATACATCAACCGAGCATAGACATCTTTGAATCGTTTGACGAGCTGCTGCTGATGAAGAGAGGAGGGCAAGTGACATATGCAGGTCCCCTTGGACGCCAT TCTCACAAACTAGTAGAATATTTCGAGGCTGTGCCGGGGGTTCCGAGGATACAAGAAGGTATCAATCCTGCTACATGGATGCTTGATATAAGCTCTGCCG CTGTAGAATCTCAGCTGAATGTAGACTTCAGTGAAATTTATTCTCATTCTGAACTATATAAGAGGAACCAGAAGCTGATTGAAGAGCTAAGCACACCAGC ACCAGAGTCAAGAGACCTCTATTTCCCAACACAATATGCACAGGATTTCTTAAATCAATTCGCTGCTTGCTTCATGAAACAGAACCGGTCCTATTGGCAG AACCCACAGTACAATGGTACCAGATTCTTGCTGACAACGGGTTTTGGTCTTCTCTTTGGACTTATCTTCTGGAACAAGGGACAACATACGAAAAAGGACC AAGATGTATACAACTTACTTGGAGCTACATACTGCTCCGTAGCGTTCCTTGCAGCTGCCTGTTCTTCTGGTGTGATGCCGGTCGTGTCTATCGAAAGAAC AATCTTGTACAGGGAGAAAGCAGCAGGGATGTACTCAGAGCTAGCTTATGCAACTGCTCAGGTCTCCATAGAGACAATCTACGTTGCATTGCAGACATTC ATCTACTCTGTAATAATATTCCTGATGATTGGATACCCATGGCATGCTAGCAACTTCCTGTGGTTCTATTTCTTCACATGCACGTGTTTCCTGTACTACG CTCTCTATGGGATGATGCTTCTAGCCCTAACTCCAAGCTACCCAATAGCCGCCATTAGCATGTCATTCTTCCTCACCATATGGAACCTCTTCAGCGGCTT CCTCATTCCGCTGAAAGAAATTCCAATATGGTGGAGGTGGTACTACTGGGCATCACCATTGGCGTGGACGGTCTACGGGTTGTTTGTATCGCAACTAGGT GACATAGAAAGTCCAATAGAAGTAGTAGGTCAAGGAAGCATGCCAGTGAAGCAGTTCTTGAAACAGACTTTTGGGTTTGATTATGATTTCCTTCCAGCTG TTGCAGCTGCCCACGTTGGGTTCGTGCTCCTTTTCTTGTTTGCTTTTGCATATGGGATTAGGTTTCTGAATTTCCAGAGAAGATAG
AA sequence Show only first row Show all	>Lus10008984 pacid=23175160 polypeptide=Lus10008984 locus=Lus10008984.g ID=Lus10008984.BGIv1.0 annot-version=v1.0 MAHSSGGGSGSTSLRWTGSNLPPKSLKQALGSSGGGGYFEFQRSLTEDDEDDLKWAAIERLPTYDRLRKGILKQVVAGAGANDDDVPFQEIDVSNLRVGE RKILMESLLKVAEVDNEKLLRRIRQRTDDVGITIPTVEIRFESLSVEGDGYVGTRALPTLANFAVNVAEEILGFFRIFPSKKRVVKILHGISGIVKPSRM TLLLGPPGSGKTTLLKTLSGKMDKNLRVSGRVTYCGHEFDEFVPQRTCAYISQHDCHVAEITVRETMEFSGRCLGVGNKYDLLAELSRREKVAGIKPDLE IDAFMKATSFSGQENSLVVDYVIKLLGLDICADIIVGDDMRRGISGGQKKRVTTGEMLVGPAKVFLMDEISTGLDSSTTYQIIRFMKEMVHIMDVTMIIS LLQPAPETFELFDDVILISEGHIVYQGPRENVLNFFESVGFKCPERKGLADFLQEVTSKNDQEQYWSRTDEPYKYISVLEFVAYFSSYSTGINLSEELRV PYDRNSVHPAALVKEKYGISNKELLKACFARELLLLKRNAFIYIFKITQLTIMSIISMTVFFRTEMKVGRLEDGSKFYGAMFYSLLNIMFNGASEVVLTT KRLPQFYKQRDFLFFPAWAFALPVWVLRIPISFIESFIWIALTYYTIGFAPAASRFFKQLLAFVAISQMAQGLFRFLASIARSDVLAPVFTMFSLLVVFV MGGFVISKDDIQSWMIWVYYISPMMYGQNAIVINEFLDDRWSAPNPDPRIPEPTVGRALLRVRGMFVENKWYWISIGTLIGLALLYNILFVFALTYLDPL KGNTSVVLDEKEKSKSLSKDGKTSSTTIQMSSETSCTPMKGSDEISQRKGMVLPFQPLSLAFSHVNYYVDMPAEMKSQGVEGERLQLLHDVSGAFRPGVL TALVGVSGAGKTTLMDVLAGRKTGGQIEGTINVSGYLKNQQTFARISGYCEQNDIHSPRITVYESLLHSAWLRLPKNVNKQDRQMFIEEVMELVELGPLR NSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVTYAGPLGRH SHKLVEYFEAVPGVPRIQEGINPATWMLDISSAAVESQLNVDFSEIYSHSELYKRNQKLIEELSTPAPESRDLYFPTQYAQDFLNQFAACFMKQNRSYWQ NPQYNGTRFLLTTGFGLLFGLIFWNKGQHTKKDQDVYNLLGATYCSVAFLAAACSSGVMPVVSIERTILYREKAAGMYSELAYATAQVSIETIYVALQTF IYSVIIFLMIGYPWHASNFLWFYFFTCTCFLYYALYGMMLLALTPSYPIAAISMSFFLTIWNLFSGFLIPLKEIPIWWRWYYWASPLAWTVYGLFVSQLG DIESPIEVVGQGSMPVKQFLKQTFGFDYDFLPAVAAAHVGFVLLFLFAFAYGIRFLNFQRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36380		ABCG34, PDR6, A...	ATP-binding cassette G34, plei...		Lus10008984 [exp]	0	1
					Lus10001326 [exp]	5.7	1.0000
					Lus10026755 [exp]	8.0	1.0000
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008511 [exp]	9.8	1.0000
					Lus10016593 [exp]	10.6	1.0000
AT2G43610			Chitinase family protein (.1)		Lus10020253 [exp]	12.8	1.0000
AT3G13690			Protein kinase protein with ad...		Lus10020384 [exp]	14.5	1.0000
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10003277 [exp]	16.2	1.0000
					Lus10016867 [exp]	18.0	1.0000
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Lus10006093 [exp]	18.7	1.0000
AT4G35220			Cyclase family protein (.1)		Lus10019823 [exp]	19.7	1.0000

Compare expression of checked genes

Lus10008984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.