Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04670 325 / 2e-99 Enhancer of polycomb-like transcription factor protein (.1) AT4G32620 142 / 1e-34 Enhancer of polycomb-like transcription factor protein (.1.2) AT1G79020 47 / 5e-05 Enhancer of polycomb-like transcription factor protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028841 [exp] 741 / 0 AT1G66950 1374 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10041252 [exp] 147 / 4e-36 AT4G32620 923 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Lus10021959 [exp] 130 / 1e-30 AT4G32620 870 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Lus10033318 [exp] 56 / 8e-08 AT1G79020 586 / 0.0 Enhancer of polycomb-like transcription factor protein (.1) Lus10034778 [exp] 56 / 1e-07 AT1G79020 577 / 0.0 Enhancer of polycomb-like transcription factor protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G235900 [exp] 415 / 2e-133 AT5G04670 518 / 2e-173 Enhancer of polycomb-like transcription factor protein (.1) Potri.008G024300 [exp] 406 / 3e-130 AT5G04670 488 / 3e-162 Enhancer of polycomb-like transcription factor protein (.1) Potri.018G034900 [exp] 136 / 1e-32 AT4G32620 613 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Potri.006G246200 [exp] 135 / 3e-32 AT4G32620 1021 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Potri.014G000600 [exp] 46 / 8e-05 AT1G79020 561 / 0.0 Enhancer of polycomb-like transcription factor protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10513 [flax] [poplar] EPL1 Enhancer of polycomb-like
Representative CDS sequence Show only first row Show all	>Lus10008985 pacid=23175185 polypeptide=Lus10008985 locus=Lus10008985.g ID=Lus10008985.BGIv1.0 annot-version=v1.0 ATGAGTCCATGTACTAGGAGGACTGACGGTTGCTTATCAACCAACGACTCTAGTAAGAAATTCAGGCGCGATTCCGGGAAGTTGAGTCCATCTGATAAGA AACTGAGCTGGAGACTTAGTGAATTGAGGGCGGAGAAGATAGCTGCAGCGCGAATTGGGCTGAACCAGCGGAACAGAACAGCCATCATGCCTTCTGGGGA AATTCGTCGTGGGACAAGGGTGATTGGGATGGTGAAAGGTTCGGATGGAGTCCGGGTTTTGCGGTCTGGCCGACGTCTGGCTCCCGGGTCCGGATCACAA GTCAGGAGGGGTAAATACGACGAAGAGGAGTGGCTCAGCAGCCACAGTATCAAGAAGCATCAGTATAAAAGCAAGGAGAATGGTGTGAAAGCACAAGAAG TCAGTAAGTCCAAAAGGAAAGCTTCTGAGATTGTTCTTCCTAGTGAAATTGAGCCTATGAAGAAGAAAGCTCGTGTAACTGCCAAAAAGAAAGCTCGTGC TTTTCCCAACAAGGCTGTGGAGAAAGCGGCGGCTGTGGGAGTAGTAGCTGACATTGACAAGATGTATGGGATTGTTTACCAAAGGAAAAGGAAAAGATTG GTTCTTGGGAAGCAAGAAAGGCTGGGAAGTAAGATGTATGGGCTTCAGTTTTCCAGGAGGCAGCCAAGGAAGAAGGAACCAGGTGGTGGTGATAAAGGTT TTGTTGTTGTTCAGACTTGTGCCTTTGTTGCTTCGGTGCAGAATTCTGATGACGGGCCAGCTTCTCTTTTGACTACCATTTTGAGGTGTATCAAGAATCT TGAAGTGGGCATGAAAGTGATTGCTAGGTTCGTGTTATCTGAGCCACTCAACAGTGTTTTTGCTTCAAGCGGTGTCAGGTTCTTGAAGGATGCACCTGCT GGTAGGAATGGGATTTGTAAATTTTTTAATTCAAGGAGCTCGGTGCCATTGTTTGGTTTGGACTTCTATGTGGTTCCTTCATGGTTTACATACATGCATA AGAATCTGGTACTGAGGATTTCTCGTGTTCCTGTAAATAAGTCTTCTGCGGAGTTGGATGATATGATGAGTGATGATGAAGATGAAATGGTCCAGTCATA CATCAGCGTGGATACTCTACAAATTGACCCGACATCTGGTGCCGATGCTTCTGAGAGTAGGCCTGCGCTGACTCCTTTGTACAAGTTGAGGAACACTTCA CCGGTTGACGGTGAGAAAGAATACATGAAAGAAGCGCATTCTGCTGTAGTTGGGGAATCAACTGGCATGTATCAATCCAGCTGCTCTGCAGATCTACTTG TTATCGAGTCAGACAGATGTTACAGGTTGAGAGGGGCTTCCATCGCTATTGAATCTTCTGATTCAAAAGATTCCATGCTTGTCTTAAAGAAAGATGGGGA AACTAGGTTGTCCTTGTTGCCTCAAAGATACATGAAACCTAGCTCCATTAACCGAGTAACTCACAATGTAATATGGTCCGGGAGCGAGAATTGGAAGCTA GAGTTCCCTAGTCGGCAGGATTGGTTCACCTTCAAGGAACTCTACAAGGAATGCGTCAATCTCAATGTTCCTGCAACTTCAACAGTTAAGGTCATTCCCA TTCCTGGGGTTAGAGAGGTGCCAGATTATGAAATTCACTGTTTCGCCACTTTTTCCATGCCCGATGCATATATTTCTGTAACTACGGATGAAGTTGGCAG AGCTTTAGCCAAACAGACTGCGAATTATGATATTGATTCTGAAGATGTGGAATGGCTCAAGGAGTTTAATTGTGGAGCTGCTCAGAGAGTTGGTGAAGCT GAACATCTTTCTGAGGACAAATTTGAGTTGATGATTGATTTGTTCGAGAAGGCTTTTTACCGCAGTTCAGATGAGTTGGTTGATGAGAAAGCAGCCATAA ATCGTGCCAGTGAGTTGGCTGTGCCAGAGGTGGCTGAAGCTGTGTATGGTTATTGGGTGAATAAGAGGAAGCAGAGGCAAGCAGTGTTACTTCGGGTTTT CCAGAGCCATAAAGTCAAGAAACCTCCAGCGATTGCAAAGCTTGTCTTACGCAAGAGGCGCTCGTTCAAGAGACAGTGCAGTCAGTTCGGAAAAGGGAAG AACCCTGGTTTAGTTCAAGCGATGGCTGTCGAACAAGATGCCCTGGAGGAGAGGAATGCCATGCTTAAGGTGGAAGAAGCGAACAACACTGCAAAAAGGT CGATGGAGTTGGCGATAGCCAAGCGAGCCAGGGCTCAGTTGCTGATGGAGAATGCTAATCTGCTGTGTTACAAAGCGATGATGGCAGTTCGAATCTCTGA AGCCCGTTCTGCTTTTGATTCCGTAGATGATGCAACTTTCGAGATGTTTGATCTGGGAACTGACAGTGCTGATGCTGGTGCCGATGCTGGGAATTAA
AA sequence Show only first row Show all	>Lus10008985 pacid=23175185 polypeptide=Lus10008985 locus=Lus10008985.g ID=Lus10008985.BGIv1.0 annot-version=v1.0 MSPCTRRTDGCLSTNDSSKKFRRDSGKLSPSDKKLSWRLSELRAEKIAAARIGLNQRNRTAIMPSGEIRRGTRVIGMVKGSDGVRVLRSGRRLAPGSGSQ VRRGKYDEEEWLSSHSIKKHQYKSKENGVKAQEVSKSKRKASEIVLPSEIEPMKKKARVTAKKKARAFPNKAVEKAAAVGVVADIDKMYGIVYQRKRKRL VLGKQERLGSKMYGLQFSRRQPRKKEPGGGDKGFVVVQTCAFVASVQNSDDGPASLLTTILRCIKNLEVGMKVIARFVLSEPLNSVFASSGVRFLKDAPA GRNGICKFFNSRSSVPLFGLDFYVVPSWFTYMHKNLVLRISRVPVNKSSAELDDMMSDDEDEMVQSYISVDTLQIDPTSGADASESRPALTPLYKLRNTS PVDGEKEYMKEAHSAVVGESTGMYQSSCSADLLVIESDRCYRLRGASIAIESSDSKDSMLVLKKDGETRLSLLPQRYMKPSSINRVTHNVIWSGSENWKL EFPSRQDWFTFKELYKECVNLNVPATSTVKVIPIPGVREVPDYEIHCFATFSMPDAYISVTTDEVGRALAKQTANYDIDSEDVEWLKEFNCGAAQRVGEA EHLSEDKFELMIDLFEKAFYRSSDELVDEKAAINRASELAVPEVAEAVYGYWVNKRKQRQAVLLRVFQSHKVKKPPAIAKLVLRKRRSFKRQCSQFGKGK NPGLVQAMAVEQDALEERNAMLKVEEANNTAKRSMELAIAKRARAQLLMENANLLCYKAMMAVRISEARSAFDSVDDATFEMFDLGTDSADAGADAGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04670			Enhancer of polycomb-like tran...		Lus10008985 [exp]	0	1
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10036515 [exp]	1.0	0.9361
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10033008 [exp]	1.4	0.9079
AT3G13682		LDL2	LSD1-like2 (.1)		Lus10038587 [exp]	2.4	0.9021
AT3G14470			NB-ARC domain-containing disea...		Lus10039540 [exp]	3.7	0.8621
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10007468 [exp]	4.9	0.8626
AT1G76320	FAR1_related	FRS4	FAR1-related sequence 4 (.1.2)		Lus10031825 [exp]	5.0	0.8722
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10018184 [exp]	6.6	0.8552
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10013540 [exp]	9.7	0.8404
AT5G55600			agenet domain-containing prote...		Lus10003906 [exp]	10.6	0.8481
AT5G18950			Tetratricopeptide repeat (TPR)...		Lus10024666 [exp]	11.1	0.8237

Compare expression of checked genes

Lus10008985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.