Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57810 185 / 4e-57 Cysteine proteinases superfamily protein (.1.2.3) AT2G38025 72 / 2e-14 Cysteine proteinases superfamily protein (.1) AT2G27350 42 / 0.0005 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028840 [exp] 540 / 0 AT3G57810 194 / 4e-59 Cysteine proteinases superfamily protein (.1.2.3) Lus10020438 [exp] 192 / 4e-59 AT3G57810 290 / 3e-97 Cysteine proteinases superfamily protein (.1.2.3) Lus10015803 [exp] 178 / 8e-56 AT3G57810 215 / 3e-71 Cysteine proteinases superfamily protein (.1.2.3) Lus10037002 [exp] 177 / 2e-55 AT3G57810 213 / 2e-70 Cysteine proteinases superfamily protein (.1.2.3) Lus10005193 [exp] 44 / 0.0001 AT2G27350 549 / 0.0 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Lus10013303 [exp] 44 / 0.0001 AT2G27350 468 / 7e-162 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Lus10006255 [exp] 41 / 0.0008 AT5G67170 363 / 7e-124 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G234300 [exp] 290 / 1e-97 AT3G57810 195 / 9e-61 Cysteine proteinases superfamily protein (.1.2.3) Potri.008G026100 [exp] 278 / 1e-92 AT3G57810 197 / 2e-61 Cysteine proteinases superfamily protein (.1.2.3) Potri.016G050900 [exp] 194 / 2e-59 AT3G57810 301 / 5e-101 Cysteine proteinases superfamily protein (.1.2.3) Potri.008G177400 [exp] 187 / 3e-59 AT3G57810 223 / 6e-74 Cysteine proteinases superfamily protein (.1.2.3) Potri.006G057400 [exp] 183 / 2e-55 AT3G57810 308 / 3e-104 Cysteine proteinases superfamily protein (.1.2.3) Potri.016G110400 [exp] 77 / 2e-16 AT2G38025 276 / 1e-94 Cysteine proteinases superfamily protein (.1) Potri.004G196800 [exp] 50 / 1e-06 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.010G057750 [exp] 43 / 1e-05 AT3G57810 52 / 1e-09 Cysteine proteinases superfamily protein (.1.2.3) Potri.009G160100 [exp] 44 / 0.0001 AT2G27350 440 / 3e-150 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.005G140500 [exp] 42 / 0.0004 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10008986 pacid=23175187 polypeptide=Lus10008986 locus=Lus10008986.g ID=Lus10008986.BGIv1.0 annot-version=v1.0 ATGCTTGGTATTCTCCGTCCGGGACCCAAGCCGTGGATTCTGACTTCTCTGGCCAATCATTTTCACGGCCACTCTCCGGCGTACTATAGCCGCCACCTCA ACAACTCTCCTTTCAAATCCTCTCCGGATGATTCCTCCTCCGCTGTCCTCCGTGGCGTCTCCAACTCTTGCCGCCTTGTAGATTCTCTATGGCATATCCA GTCCTCTTCCTGCAGCAGCTGCATCCGCTCCCTCGTTGAGCCTCCTAGAGGAGAAGGCTCGTGGAACGTCGTGTGGGATGCACGCCCTGCGCGGTGGTTA ACCCGTCCGGACTCCGCCTGGATTCTCTTCGGTGCTTGTCATGCTCCGATTGAATTCTGGTTGGCGAACCCAGCGGATAATACTGTTCCGACTGCTGATC AAGCGGGAGTTGGACGAAACGATGATGCTAGTCCAGCTGCCGGTTTCGAAGTGAAGAACGAGACGTCTGCTAATTACAAGGTCACAGGCGTGCTTGCTGA TGGGAGATGTTTGTTTAGAGCAATAGCTCATGGTGATTGCCTAAGGAATGGGAAAGAAGCTCCTGACGAAGATTGCCAACGACAGCTCGCTGATGAACTA AGAGCTCAAGTAGCTAAGGAGCTTTCGAAGAGGCGGAAAGAAGTCGAATGCTTCATCGAAGAAGATTTCGATACATATGTCAACAGAATACAGCAGCCTT ATGTATGGGGTGGAGAGCCTGAATTGTTGATGTCCTCCCATATTCTGAAGACGATGATATCGGTCTTCATGATGGACCGGATATCTGGCGATCTAGTGAG CATAACAAGCTATGGTGAAGAGTATGGGAAAGGTGGAGAGAACCCCATTAACGTGCTGTTTCATGGATATGGTCACTATGACTTGTTGGAGGGGTTGAAC AAGAGTTACCAGCAGAAAGCCAACGTATAG
AA sequence Show only first row Show all	>Lus10008986 pacid=23175187 polypeptide=Lus10008986 locus=Lus10008986.g ID=Lus10008986.BGIv1.0 annot-version=v1.0 MLGILRPGPKPWILTSLANHFHGHSPAYYSRHLNNSPFKSSPDDSSSAVLRGVSNSCRLVDSLWHIQSSSCSSCIRSLVEPPRGEGSWNVVWDARPARWL TRPDSAWILFGACHAPIEFWLANPADNTVPTADQAGVGRNDDASPAAGFEVKNETSANYKVTGVLADGRCLFRAIAHGDCLRNGKEAPDEDCQRQLADEL RAQVAKELSKRRKEVECFIEEDFDTYVNRIQQPYVWGGEPELLMSSHILKTMISVFMMDRISGDLVSITSYGEEYGKGGENPINVLFHGYGHYDLLEGLN KSYQQKANV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57810			Cysteine proteinases superfami...		Lus10008986 [exp]	0	1
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10002359 [exp]	1.7	0.8421
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10019788 [exp]	3.6	0.8698
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Lus10020188 [exp]	4.9	0.8098
AT2G21340			MATE efflux family protein (.1...		Lus10042074 [exp]	5.2	0.8126
AT2G23140			RING/U-box superfamily protein...		Lus10011514 [exp]	5.3	0.8388
AT5G04830			Nuclear transport factor 2 (NT...		Lus10008971 [exp]	6.0	0.8244
AT2G20440			Ypt/Rab-GAP domain of gyp1p su...		Lus10043064 [exp]	7.3	0.7824
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036224 [exp]	7.4	0.8106
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10039538 [exp]	12.4	0.7955
AT1G18390			Protein kinase superfamily pro...		Lus10029132 [exp]	12.4	0.8447

Compare expression of checked genes

Lus10008986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.