Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04550 546 / 0 Protein of unknown function (DUF668) (.1) AT3G23160 181 / 5e-50 Protein of unknown function (DUF668) (.1) AT5G51670 173 / 1e-47 Protein of unknown function (DUF668) (.1) AT5G08660 77 / 1e-14 Protein of unknown function (DUF668) (.1) AT1G34320 71 / 1e-12 Protein of unknown function (DUF668) (.1) AT1G30755 64 / 1e-10 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028839 [exp] 558 / 0 AT5G04550 282 / 2e-89 Protein of unknown function (DUF668) (.1) Lus10021210 [exp] 199 / 3e-56 AT3G23160 659 / 0.0 Protein of unknown function (DUF668) (.1) Lus10022201 [exp] 197 / 2e-55 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Lus10002840 [exp] 168 / 2e-45 AT5G04550 308 / 8e-98 Protein of unknown function (DUF668) (.1) Lus10021138 [exp] 166 / 2e-44 AT5G04550 300 / 2e-94 Protein of unknown function (DUF668) (.1) Lus10031691 [exp] 157 / 1e-41 AT5G51670 452 / 2e-156 Protein of unknown function (DUF668) (.1) Lus10031110 [exp] 157 / 1e-41 AT5G51670 454 / 8e-157 Protein of unknown function (DUF668) (.1) Lus10017260 [exp] 76 / 3e-14 AT1G30755 567 / 0.0 Protein of unknown function (DUF668) (.1) Lus10006049 [exp] 74 / 2e-13 AT1G34320 919 / 0.0 Protein of unknown function (DUF668) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G233700 [exp] 619 / 0 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.008G026800 [exp] 610 / 0 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.006G117000 [exp] 373 / 2e-122 AT5G04550 356 / 8e-116 Protein of unknown function (DUF668) (.1) Potri.008G164700 [exp] 327 / 4e-104 AT3G23160 661 / 0.0 Protein of unknown function (DUF668) (.1) Potri.010G074000 [exp] 322 / 3e-102 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Potri.012G129900 [exp] 201 / 7e-58 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.015G131800 [exp] 171 / 4e-47 AT5G51670 442 / 1e-152 Protein of unknown function (DUF668) (.1) Potri.002G021400 [exp] 75 / 7e-14 AT1G30755 568 / 0.0 Protein of unknown function (DUF668) (.1) Potri.013G115300 [exp] 72 / 6e-13 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G001500 [exp] 71 / 1e-12 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11961 [flax] [poplar] DUF3475 Domain of unknown function (DUF3475) PF05003 [flax] [poplar] DUF668 Protein of unknown function (DUF668)
Representative CDS sequence Show only first row Show all	>Lus10008987 pacid=23175151 polypeptide=Lus10008987 locus=Lus10008987.g ID=Lus10008987.BGIv1.0 annot-version=v1.0 ATGGTGGCGGAATCATGGTTTCGAAACCTGTGGAAGTTCCCACGGAAGCATGATTCCAGTCACGATAAATTCCCTCTTGGTGTTCTATCATTGGAAGTTT CAAGCTTAATGTCGAAAGTAGTTCATCTATGGCATGCTCTGAGTGATAAGCAGGTTTCCAGGTTGAGAGAGGAGATCAACAACTACGTAGGGATCAAGAA ACTCGTGTCCGAGGACGATGATTTCGTCGTTAGGTTGATTTGTGCCGAGATGATGGAGAGTTTGGTACACGTCGCCAAGTCGGTGGCAAGGTTAGGCAAG AAATGCAGCGATCCGACCCTTAAGAGCTTCGAAACTGCCTTTCACGAACTGGTGAAAATCGGCATTGACCAATATGGATGGGAGTTTTCAGTGAAAAAAA TGGATAAGAAGGTTAAGAAGATGGAGCGGTTCGTTTCTATCAACGGTAGTTTGTATCAGGAGATGGAGTTGCTTGCCGATCTCGAGCAGACTGTGAGAAG AATGAAATGCAGCGAACCGATTCCGGACTGTTTTCCCGAGTATCACAAGAAGCTTCTGTGGAAGCAACACGAAGTGAAAGGCTTGAGGGAGATGTCGCTC TGGAATCGGAATTATGATTATGCAGTTGGCCTCTTAGCAAGATCTCTATACACAATATTCAGCAGAATCAATCATGTTTTCGGTTTTAATCCGATGACGG TTGATTCGGTTGACTCGAGAATGCGAGATTCTGATTACAATTATCGTGGCCAGTCAGTTTCGACGATATTGCAGTCTTCTTCAGTTGCTCAATCCGAAAC TAGAAGAAGCATCCCGAGATTCTCTTCTGGTCCCCTTGGGATGTACACTGGGAAATCCGGTCCGATTCCGAAGTCGAATAAGAGAACCGATTTCTACTCG GGTCCTATAGGTGGTGGTGGTAGTGGCTTGCTTGCCAAGCAAGCTGTTCCTAGCTTGGGAAAGAAGAAAGGATTCCAATTCTTTTCAGGTCCCCTTGGGA CGAAGCCTGCGAATTCAAAGTCCGAATCCGGAAAATTCAGCAAGATTTGGCACAATCGTCGCTCGAAACAAAGCCGATCATCTCATGTTGGCCCTGTTGT CAATAGCCACATTCTGGATCTTTATACCGGACTTCTCGATGATGCTGTAACGGAAAGTAATCCTGGTAGCTTGGCAGTTTCTACTACCGGGCAGTCGATA TATGGGACCAAGTTCATAGTAGCTCTTCCTGAAACCCTCGGTGCCACTGCTTTAGCCCTCCACTATGCAAACGTCATAATCGTTTTCGAGAAGCTGGCTG CATCTCCTCATTTGATTAGCCATGATGCCAGGGACGATTTGTACAGTATGTTACCTGCAAGTGTGAGGAATTCACTACGGCAGAAGCTGAAACCATATGC CAAGAGTTTGGCTTCTTATGCTGGGTACGATAATGAGCTAGCGCGAGAGTGGACCGATGCAATAGCTTCGATATTGGAATGGTTATCCCCGCTGGCTCAT AACATGATCAGATGGCAGTCGGATAGAAGTTTCGAGCAGCAGAATTTCGTTTCGAGGACGAATGTTTACCTGGTGCAGACGCTTTTCTACGCAAACCAGG AAAAGACGGAAGCGACGATCGCTGAGCTTCTCGTTGGTCTGAACTACCTGTGGAGATCGAGTCGGGATCGTGACGGAAGTGGTCCTCCTCCTAGGGAGTG CGCTGCTGGGAGAACGTTTGATGAGTGTGTGGAGCTCGATGACGATTAG
AA sequence Show only first row Show all	>Lus10008987 pacid=23175151 polypeptide=Lus10008987 locus=Lus10008987.g ID=Lus10008987.BGIv1.0 annot-version=v1.0 MVAESWFRNLWKFPRKHDSSHDKFPLGVLSLEVSSLMSKVVHLWHALSDKQVSRLREEINNYVGIKKLVSEDDDFVVRLICAEMMESLVHVAKSVARLGK KCSDPTLKSFETAFHELVKIGIDQYGWEFSVKKMDKKVKKMERFVSINGSLYQEMELLADLEQTVRRMKCSEPIPDCFPEYHKKLLWKQHEVKGLREMSL WNRNYDYAVGLLARSLYTIFSRINHVFGFNPMTVDSVDSRMRDSDYNYRGQSVSTILQSSSVAQSETRRSIPRFSSGPLGMYTGKSGPIPKSNKRTDFYS GPIGGGGSGLLAKQAVPSLGKKKGFQFFSGPLGTKPANSKSESGKFSKIWHNRRSKQSRSSHVGPVVNSHILDLYTGLLDDAVTESNPGSLAVSTTGQSI YGTKFIVALPETLGATALALHYANVIIVFEKLAASPHLISHDARDDLYSMLPASVRNSLRQKLKPYAKSLASYAGYDNELAREWTDAIASILEWLSPLAH NMIRWQSDRSFEQQNFVSRTNVYLVQTLFYANQEKTEATIAELLVGLNYLWRSSRDRDGSGPPPRECAAGRTFDECVELDDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04550			Protein of unknown function (D...		Lus10008987 [exp]	0	1
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10031029 [exp]	1.0	0.9202
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012319 [exp]	2.0	0.8937
					Lus10024821 [exp]	3.0	0.8762
AT1G59710			Protein of unknown function (D...		Lus10013281 [exp]	4.5	0.8686
AT2G46080			unknown protein		Lus10007920 [exp]	5.9	0.8538
AT5G16110			unknown protein		Lus10009170 [exp]	7.3	0.8448
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10023838 [exp]	8.9	0.8441
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10023794 [exp]	9.2	0.8572
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10030667 [exp]	9.8	0.8158
AT2G46080			unknown protein		Lus10005122 [exp]	10.7	0.8580

Compare expression of checked genes

Lus10008987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.