Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10030 400 / 7e-135 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G18680 263 / 4e-84 Amino acid kinase family protein (.1) AT3G14180 56 / 2e-08 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT2G44730 50 / 2e-06 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G58630 49 / 5e-06 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G54390 45 / 9e-05 Trihelix sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020884 [exp] 253 / 5e-80 AT3G18680 452 / 8e-161 Amino acid kinase family protein (.1) Lus10033492 [exp] 236 / 8e-74 AT3G18680 438 / 4e-155 Amino acid kinase family protein (.1) Lus10025404 [exp] 52 / 3e-07 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 49 / 1e-06 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10020652 [exp] 50 / 3e-06 AT5G16860 344 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024143 [exp] 47 / 2e-05 AT3G54390 172 / 2e-50 sequence-specific DNA binding transcription factors (.1) Lus10025406 [exp] 47 / 2e-05 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10000963 [exp] 47 / 3e-05 AT2G44730 124 / 7e-32 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10040141 [exp] 47 / 3e-05 AT2G44730 123 / 1e-31 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G027000 [exp] 517 / 0 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.010G233500 [exp] 516 / 0 AT3G10030 434 / 3e-148 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.006G117300 [exp] 427 / 8e-146 AT3G10030 591 / 0.0 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.005G057700 [exp] 251 / 1e-79 AT3G18680 467 / 1e-166 Amino acid kinase family protein (.1) Potri.001G113600 [exp] 55 / 3e-08 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.007G110301 [exp] 49 / 2e-07 AT3G18680 0 / 1 Amino acid kinase family protein (.1) Potri.003G118600 [exp] 52 / 4e-07 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.002G139500 [exp] 52 / 7e-07 AT2G44730 252 / 3e-81 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.014G051200 [exp] 51 / 1e-06 AT2G44730 239 / 3e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.001G179800 [exp] 50 / 2e-06 AT3G24490 206 / 2e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00696 [flax] [poplar] AA_kinase Amino acid kinase family
Representative CDS sequence Show only first row Show all	>Lus10008988 pacid=23175148 polypeptide=Lus10008988 locus=Lus10008988.g ID=Lus10008988.BGIv1.0 annot-version=v1.0 ATGGCCACTGAGGATTTCCCGCTAATCGACGATCCCCACGCTCCGCCGCCGCCTCCTCCTCCTCCCGTCGTCCAGCCCGACTCCGAGTCCGCTCAAGGTG GAGGAGATTATTACCCTACCTACCCCGACTCCGAGCAGGAAAAATCCGGATCCGCCGCTCCGGCGACGCCGTCGTCGAAGCGCAACCACGACCAGGCCGA ACAGCAACCCGATCCGGCGTCGCAGTCGCAGTCGCAGCAGTACTACAACAATAACAGTAGTAGCAGCAAGAGGCAGAGATCGAACGGGAAGAGCGCGGAG CCGGAATTGACTCCGAACGCCGACTACAGGACGGACTATCGCAAGGATAGAGAGGAATGGAGCGATTCGGCGATCTCGTGTTTGTTGGACGCGTACATGG AGAAGTACAGCCAGCTGAGCCGGGGGAACGTACAGTCGGCGGAGCCGGGGGAACCTCCGCGGAAGAGCGTGGAGCAGTGTAAGAACAAGATTGATAACTT GAAGAAGAGGTATAAGGTGGAGCTTCAGAGGATTAACAGCAATGGGGGTGGAGGGAGTAATTGGCATTGGTTTAAGCAGATTGAAGCTATCATAGGACAT TCTTCTTCTGGTGGAGGTGGTTCTAAGGCGCTTTCAGCTGGTGGAGCCAGTGTAGCTGTTCCGGCTGAGAGTGATCCTTCTGCTGATACTGCTACTGGGT ATACCCGAAGCAGTGCCGCTGCCTATGCAAGCAACTTGAAATCTACTAAATCATCAGAGCCGACCTTGAAATGGAGAAGAGTTGTGTTTAAGATCAGCGG TGCTGCTCTGGCTGGTACTAGCCAGAATATTGATCCAAAGGTTGCAATGCAGATAGCAACGGAAGTAGCAGCAGTTCGCCGCCTTGGATTGGAGGTAGCG ATTGTTGTTGGTGCTCGTAACTTCTTTTGTGGAGATTCTTGGATATCTGCCACTGGCTTGGACAGACCGACAGCATACCAGATTGGCATGATGGGAACCG TGATGAATTCAGTATTGCTGCAATCAGCTTTAGAGAAACATGGCATTCAGGCTCGCGTACAAAGTGCATTTTCAATGCCGGAATTGGCTGAGCCTTACAG CAGGCTACGAGCTATTCGACATCTCGAGAAAGGCAGAGTCGTCATATTTGGTGGAGTGGGCGCGGGAGCCGGAAACCCTTTGTTTACGACAGACACAGCA GCAGCTCTGAGAGCTTCTGAGCTCAATGCAGATGCTCTTCTGAAAGGCACAAACGTAAACGGAATCTATGATTGGCAAACCAGCAACAGCAATATAATAC TGGATCATACAACATTCAGAGACGTGGTATCCGGCGGAGCTACCTCGATAGATATGATGGCGATTACCTACTGCGAAGAGAATGGAATTCCAGTGGTGGT GTTCAATATGCTGGAACCTGGGAATATATCAAGAGCACTGTGTGGTGAACAAGTCGGGACTCTAATTGATCAAGCAGGAGGAGGGATGAGTCAATAA
AA sequence Show only first row Show all	>Lus10008988 pacid=23175148 polypeptide=Lus10008988 locus=Lus10008988.g ID=Lus10008988.BGIv1.0 annot-version=v1.0 MATEDFPLIDDPHAPPPPPPPPVVQPDSESAQGGGDYYPTYPDSEQEKSGSAAPATPSSKRNHDQAEQQPDPASQSQSQQYYNNNSSSSKRQRSNGKSAE PELTPNADYRTDYRKDREEWSDSAISCLLDAYMEKYSQLSRGNVQSAEPGEPPRKSVEQCKNKIDNLKKRYKVELQRINSNGGGGSNWHWFKQIEAIIGH SSSGGGGSKALSAGGASVAVPAESDPSADTATGYTRSSAAAYASNLKSTKSSEPTLKWRRVVFKISGAALAGTSQNIDPKVAMQIATEVAAVRRLGLEVA IVVGARNFFCGDSWISATGLDRPTAYQIGMMGTVMNSVLLQSALEKHGIQARVQSAFSMPELAEPYSRLRAIRHLEKGRVVIFGGVGAGAGNPLFTTDTA AALRASELNADALLKGTNVNGIYDWQTSNSNIILDHTTFRDVVSGGATSIDMMAITYCEENGIPVVVFNMLEPGNISRALCGEQVGTLIDQAGGGMSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Lus10008988 [exp]	0	1
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10000360 [exp]	1.0	0.9292
AT1G32730			unknown protein		Lus10040132 [exp]	3.2	0.8964
AT5G44180	HD		Homeodomain-like transcription...		Lus10017688 [exp]	5.7	0.8677
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10018609 [exp]	6.0	0.8788
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10025933 [exp]	6.5	0.9056
AT5G55530			Calcium-dependent lipid-bindin...		Lus10016592 [exp]	6.6	0.9157
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10039845 [exp]	7.7	0.9064
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10010129 [exp]	8.8	0.8745
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10042459 [exp]	9.2	0.8791
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10004161 [exp]	9.4	0.9115

Compare expression of checked genes

Lus10008988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.