Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18600 508 / 3e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65900 484 / 5e-167 DEA(D/H)-box RNA helicase family protein (.1) AT5G54910 259 / 5e-79 DEA(D/H)-box RNA helicase family protein (.1) AT1G71370 231 / 1e-69 DEA(D/H)-box RNA helicase family protein (.1) AT5G05450 230 / 5e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G40700 229 / 2e-68 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60990 211 / 4e-63 DEA(D/H)-box RNA helicase family protein (.1) AT5G08620 211 / 4e-62 ATRH25, STRS2 STRESS RESPONSE SUPPRESSOR 2, RNA HELICASE 25, DEA(D/H)-box RNA helicase family protein (.1) AT1G71280 196 / 1e-57 DEA(D/H)-box RNA helicase family protein (.1) AT5G08610 203 / 2e-57 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009616 [exp] 703 / 0 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027240 [exp] 644 / 0 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 639 / 0 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012172 [exp] 276 / 2e-84 AT5G54910 865 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10007574 [exp] 274 / 2e-83 AT5G54910 862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009838 [exp] 224 / 2e-66 AT5G05450 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030523 [exp] 219 / 1e-64 AT2G40700 799 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012874 [exp] 218 / 2e-64 AT2G40700 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031182 [exp] 212 / 2e-63 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G045300 [exp] 644 / 0 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G250700 [exp] 638 / 0 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G423300 [exp] 267 / 1e-81 AT5G54910 858 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G059100 [exp] 228 / 3e-68 AT2G40700 814 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G068800 [exp] 221 / 4e-67 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G073100 [exp] 224 / 8e-67 AT5G05450 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G249100 [exp] 209 / 2e-62 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G169800 [exp] 202 / 1e-57 AT5G63630 810 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G097700 [exp] 202 / 2e-57 AT5G63630 768 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G013900 [exp] 195 / 2e-57 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10008989 pacid=23173344 polypeptide=Lus10008989 locus=Lus10008989.g ID=Lus10008989.BGIv1.0 annot-version=v1.0 ATGAAGAAGAAGAAGACTGAGACGAAGGATGAGGAAGGTGATGGAGAAAAGGAGGATGCGGATAGGGATGAAGAAGAAGAAGAGGAAGTAGAAGATGAAG CCGAGGTGAAGGAGAAGAAAGTCAAGAGCGGCGGAGGCATTATGAGTACTGAGTCGTTTGATTCTCTCGGATTGTCCGGGCCTACGAGCAAGGCGATTCA GGCGATGGGATTTCAATATTTGACTCAGATTCAAGCAAGGGCGATCCCGCCTCTCCTAATCGGAAAGGATGTTCTAGGTGCAGCAAGGACAGGTTCGGGG AAGACTCTTGCCTTCCTTATACCAGCTGTGGAGCTGCTGTATAATATCCATTTTGCTCCTCGTAATGGAACTGGGGTGATTGTTATTTGCCCTACTAGGG AGCTTGCCATACAGACTCATAAAGTAGCAGAAGATCTTCTCAAGTGTCATTCACAGACTCTCGGGCTGGTTATTGGTGGGGCAGCGAGGAGAGGAGAAGC TGAACGTATTGTTAAAGGGGTTAACTTGTTGGTAGCGACTCCTGGCCGGCTTCTTGATCATCTTCAAAATACTAAGGGCTTTATCTTTAAGAACTTGAAG TGCCTGATTATTGATGAGGCAGACAGGATACTGGAGGCGAACTTCGAGGAAGAAATGAAACAGATTATCAACATTCTACCTAAGAGCAGGCAGACTGCGT TATTCTCAGCTACCCAAACTAAAACGGTAGAGGATCTTGCCCGGATGTCATTTCAGACTCCACCTATATATATTGATGTCGATGATGGGAGAAACAAGGT CACAAATGAAGGACTCCAGCAAGGTTATACTGTAGTTCCAAGTGCCAAGAGATTTCTTCTTCTTTACTCTTTCTTGAAGAGGAATTTATCCAAGAAAGTC ATGGTTTTCTTCTCGTCTTGCAATTCCGTCAAGTTCCATTCTGCACTTCTTGGATACATTCAACTACCATGTTTTGATATACATGGAAAACAAAAGCAAC AGAAGCGGACCACTACTTTTTTCGATTTCTGCAAGGCCGAGAAAGGGATTTTGCTGTGCACTGATGTTGCTGCTCGTGGACTTGATATCCCTGCTGTGGA TTGGATTGTCCAATATGATCCTCCGGACGAGCCCAAGATTCCTCAACATCCAACTGCTGCAACACCCACACCTCCTTTTGCCATGTTGAACACCACCATG GTCTCCTCCTTCACTATGGATGCAAGCGGAAGACCGGAGCAATCTTTCAAGAAAGTGAACGGCAAGGCTCAGCCCACGTGGAACACATCGGTGCTCAAGT TGAACGAGACAAGATTCAAATTAGAACGCCCAAATTTGTGTGATATCCAGTAA
AA sequence Show only first row Show all	>Lus10008989 pacid=23173344 polypeptide=Lus10008989 locus=Lus10008989.g ID=Lus10008989.BGIv1.0 annot-version=v1.0 MKKKKTETKDEEGDGEKEDADRDEEEEEEVEDEAEVKEKKVKSGGGIMSTESFDSLGLSGPTSKAIQAMGFQYLTQIQARAIPPLLIGKDVLGAARTGSG KTLAFLIPAVELLYNIHFAPRNGTGVIVICPTRELAIQTHKVAEDLLKCHSQTLGLVIGGAARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIFKNLK CLIIDEADRILEANFEEEMKQIINILPKSRQTALFSATQTKTVEDLARMSFQTPPIYIDVDDGRNKVTNEGLQQGYTVVPSAKRFLLLYSFLKRNLSKKV MVFFSSCNSVKFHSALLGYIQLPCFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKIPQHPTAATPTPPFAMLNTTM VSSFTMDASGRPEQSFKKVNGKAQPTWNTSVLKLNETRFKLERPNLCDIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18600			P-loop containing nucleoside t...		Lus10008989 [exp]	0	1
AT1G80530			Major facilitator superfamily ...		Lus10001678 [exp]	11.0	0.8334
AT5G05520			Outer membrane OMP85 family pr...		Lus10007514 [exp]	12.7	0.8349
AT1G70280			NHL domain-containing protein ...		Lus10029176 [exp]	24.7	0.8312
AT1G74050			Ribosomal protein L6 family pr...		Lus10038775 [exp]	34.9	0.8120
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10020084 [exp]	36.0	0.8218
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10004640 [exp]	36.5	0.8058
AT3G16980		NRPE9A, NRPD9A,...	RNA polymerases M/15 Kd subuni...		Lus10037747 [exp]	44.6	0.7904
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Lus10003250 [exp]	49.6	0.8045
AT5G08780			winged-helix DNA-binding trans...		Lus10002941 [exp]	55.2	0.7887
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10027304 [exp]	62.9	0.7952

Compare expression of checked genes

Lus10008989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.