Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74070 313 / 7e-107 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 70 / 3e-14 ROC1 rotamase CYP 1 (.1) AT2G16600 69 / 9e-14 ROC3 rotamase CYP 3 (.1.2) AT5G13120 69 / 1e-13 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT2G29960 66 / 6e-13 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT2G21130 66 / 8e-13 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G58710 66 / 1e-12 ROC7 rotamase CYP 7 (.1) AT3G55920 66 / 3e-12 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G63400 61 / 4e-10 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT5G35100 60 / 4e-10 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009619 [exp] 542 / 0 AT1G74070 312 / 3e-106 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10007579 [exp] 71 / 1e-14 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10018238 [exp] 69 / 8e-14 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 69 / 9e-14 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10017258 [exp] 68 / 1e-13 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2) Lus10012167 [exp] 67 / 3e-13 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10040007 [exp] 69 / 5e-13 AT5G35100 325 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10019578 [exp] 67 / 1e-12 AT5G35100 320 / 2e-110 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10011330 [exp] 67 / 2e-12 AT5G13120 336 / 2e-117 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G058700 [exp] 385 / 8e-135 AT1G74070 311 / 2e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G251700 [exp] 69 / 1e-13 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.009G130100 [exp] 67 / 3e-13 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G046500 [exp] 66 / 1e-12 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.005G240200 [exp] 65 / 2e-12 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.005G215800 [exp] 67 / 4e-12 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.002G021500 [exp] 64 / 5e-12 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.006G189900 [exp] 64 / 2e-11 AT5G35100 326 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2) Potri.004G168800 [exp] 60 / 7e-11 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.001G060200 [exp] 61 / 1e-10 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10008990 pacid=23173320 polypeptide=Lus10008990 locus=Lus10008990.g ID=Lus10008990.BGIv1.0 annot-version=v1.0 ATGAACCTCCACCATCATCCTCCTCCCACACAGCCACCGCCACCACCGACACCACCCATCCTTCAGTCGCCGTCGAAACTGACTCGAAGAGAGCTCACCG TTTTCGGAAACTCATCGTTGCTCCTGCATTATTTCAACCTGAACAAAGCAAGAGCTGAAGATGGCACTGTCACAGATACCGGGATTCAACAGCTCTGCAG CAACATTGGACGAGAAGTCGTTGCAACAGCCAAGACGGCGTTCATCGATGTGTCGATCGATGGGAAGCCAGCGGGAAGGATCGTGATTGGCCTGTACGAG GACAATGTTCCCGTGGGAGCTGCAAGATTCAGCAACCTGGTGAGTGGAGCCGCAGGGATAACCTACAGGAGGAAAGAGTTCATTAAGATCACTCCGAGCT ACGTCCAGCACGGAGGGGTGAGGTCGTACGGGGTGGATGCGGAGCTGGCAAGGAGCACGACGGGGAACGATTTGGGGGCCGAGACGTTGGTGGACGAATG GGAGAGGCAGAACGAGGGGTGTCCTCCCGGGACGACAAAGAACTTGGCAGGGAGTGTTGGGATTATTGTTAGGAACCCTTATAAGCCGCCACCGAAGATG AAGCTAGTGGCCAAAAAGGGGAAGCTGGAGATTGATGAAGAGGAGGTCGGTGTGAGCCCCAACGGGACTGAGTTTGTGATTGCAACGAAGGATTCGCCTG AGCTCGATGGTTCGGCTTTGGTGATTGGAAAGGTGCTTGAAGGTATGGAAGTTGCTGAGAGGATTGGACAGGTGAAGTCTGTGCAGGACAATACTAGCTC TCCTTACTTCAGAGTGGCGAAGCTAATCGGGGACAAGAGGGCAGTTGTGGCAGAGAGAGGATTCAACAGGCCATATTCCAAGGTGATCATCACAAACTGT GGTTTAATGGAATAG
AA sequence Show only first row Show all	>Lus10008990 pacid=23173320 polypeptide=Lus10008990 locus=Lus10008990.g ID=Lus10008990.BGIv1.0 annot-version=v1.0 MNLHHHPPPTQPPPPPTPPILQSPSKLTRRELTVFGNSSLLLHYFNLNKARAEDGTVTDTGIQQLCSNIGREVVATAKTAFIDVSIDGKPAGRIVIGLYE DNVPVGAARFSNLVSGAAGITYRRKEFIKITPSYVQHGGVRSYGVDAELARSTTGNDLGAETLVDEWERQNEGCPPGTTKNLAGSVGIIVRNPYKPPPKM KLVAKKGKLEIDEEEVGVSPNGTEFVIATKDSPELDGSALVIGKVLEGMEVAERIGQVKSVQDNTSSPYFRVAKLIGDKRAVVAERGFNRPYSKVIITNC GLME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74070			Cyclophilin-like peptidyl-prol...		Lus10008990 [exp]	0	1
AT4G00030			Plastid-lipid associated prote...		Lus10020912 [exp]	1.4	0.9464
AT4G31560		HCF153	high chlorophyll fluorescence ...		Lus10005314 [exp]	3.0	0.9444
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Lus10014669 [exp]	3.9	0.9513
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10025025 [exp]	5.0	0.9374
AT1G51100			unknown protein		Lus10040511 [exp]	6.5	0.9354
AT3G18870			Mitochondrial transcription te...		Lus10026325 [exp]	7.9	0.9315
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10039739 [exp]	9.8	0.9414
AT4G16580			Protein phosphatase 2C family ...		Lus10014413 [exp]	11.8	0.8889
AT3G61870			unknown protein		Lus10010112 [exp]	13.7	0.9285
AT1G54500			Rubredoxin-like superfamily pr...		Lus10019005 [exp]	14.8	0.9289

Compare expression of checked genes

Lus10008990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.