Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21920 162 / 2e-49 ATYLMG2 YGGT family protein (.1.2) AT4G27990 72 / 3e-15 ATYLMG1-2 YGGT family protein (.1) AT3G07430 72 / 4e-15 ATYLMG1-1, EMB1990 embryo defective 1990, YGGT family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009622 [exp] 347 / 1e-122 AT5G21920 181 / 7e-57 YGGT family protein (.1.2) Lus10009586 [exp] 69 / 7e-14 AT4G27990 204 / 2e-66 YGGT family protein (.1) Lus10020405 [exp] 68 / 9e-14 AT4G27990 199 / 1e-64 YGGT family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G220400 [exp] 195 / 2e-62 AT5G21920 222 / 1e-72 YGGT family protein (.1.2) Potri.002G250200 [exp] 72 / 5e-15 AT4G27990 210 / 2e-68 YGGT family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02325 [flax] [poplar] YGGT YGGT family
Representative CDS sequence Show only first row Show all	>Lus10008993 pacid=23173350 polypeptide=Lus10008993 locus=Lus10008993.g ID=Lus10008993.BGIv1.0 annot-version=v1.0 ATGATGTCGCCGGCGGTGGAGCAGAGCCTACCGGAGAAATCTAATTGGTGTTGGTCTCCCATGGCGTTGCTACTTCCATCACCTCACCCACTCCACATTC CTATCTTAAGGAAACCAGAGTTCCACAAGTGCGTCGAAAACTTCTCGAGATTCCTGCAGCAACTACTACTCACCTCGCAAAACCCCATTCTCAAGACCTT CGTTCAACTCTCTTCACCGCCGCCTCCTCCTCCGCGTGAATTCAAAATGGCAAGCTCGGCAAACTTCGCGGCGATTTTGCCGGGGGATTCAGTGGCCGGA GTAGTGGTGGCTAACGGAGTACTCAATTTCCTCAACATTTACAATACCTTACTCGTTGTTAGGCTCGTCCTCACCTGGTTCCCCAACTCCCCTCCTGCAA TCGTCTCTCCTCTCAGCACGTTATGTGATCCATACCTCAACATATTCCGCGGAATCATACCGCCTCTGGGAGGGACGCTGGATTTGTCACCAATTCTGGC ATTCCTGGTTCTGAATGCTTTCACCAGCACGGCTTCTGCGATTCCTGCTGAACTTCCAGGTGAAGCAATTATGGCTTCTTCTTCTTCTCCTGCCATTCGT AATCGTAGATCTCCTACTTGGTTCGATGGTCTCACTACATCACAAAGGAAATGGTTGTCCAGGCTACAGAGTGACAAGAAGTCTAATAAGTGA
AA sequence Show only first row Show all	>Lus10008993 pacid=23173350 polypeptide=Lus10008993 locus=Lus10008993.g ID=Lus10008993.BGIv1.0 annot-version=v1.0 MMSPAVEQSLPEKSNWCWSPMALLLPSPHPLHIPILRKPEFHKCVENFSRFLQQLLLTSQNPILKTFVQLSSPPPPPPREFKMASSANFAAILPGDSVAG VVVANGVLNFLNIYNTLLVVRLVLTWFPNSPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLVLNAFTSTASAIPAELPGEAIMASSSSPAIR NRRSPTWFDGLTTSQRKWLSRLQSDKKSNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21920		ATYLMG2	YGGT family protein (.1.2)		Lus10008993 [exp]	0	1
AT4G17560			Ribosomal protein L19 family p...		Lus10014467 [exp]	3.3	0.9276
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10036021 [exp]	9.6	0.9195
AT4G17560			Ribosomal protein L19 family p...		Lus10023720 [exp]	9.8	0.9184
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10020945 [exp]	12.6	0.8986
AT5G21920		ATYLMG2	YGGT family protein (.1.2)		Lus10009622 [exp]	14.4	0.8940
AT4G29260			HAD superfamily, subfamily III...		Lus10014968 [exp]	15.9	0.8803
AT1G64510			Translation elongation factor...		Lus10032419 [exp]	19.4	0.9108
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Lus10025445 [exp]	19.6	0.9088
AT2G24090			Ribosomal protein L35 (.1)		Lus10007706 [exp]	19.6	0.9092
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10020071 [exp]	20.3	0.8819

Compare expression of checked genes

Lus10008993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.