Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71210 642 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 166 / 5e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 160 / 1e-40 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 149 / 2e-37 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G59900 150 / 4e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G30290 144 / 3e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G64100 143 / 7e-35 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT2G02150 139 / 9e-34 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G41170 136 / 2e-33 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G28010 137 / 4e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009626 [exp] 1794 / 0 AT1G71210 649 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 171 / 7e-44 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 168 / 8e-43 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 159 / 1e-39 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 157 / 4e-39 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005303 [exp] 155 / 1e-38 AT1G30290 1037 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042529 [exp] 144 / 5e-35 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 144 / 5e-35 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008650 [exp] 143 / 1e-34 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G229100 [exp] 830 / 0 AT1G71210 618 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G000601 [exp] 194 / 3e-56 AT1G71210 147 / 4e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 166 / 2e-42 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G000701 [exp] 149 / 2e-41 AT1G71210 134 / 3e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046200 [exp] 160 / 3e-41 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 160 / 5e-41 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 154 / 9e-39 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 152 / 3e-38 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G014100 [exp] 153 / 7e-38 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G019200 [exp] 149 / 3e-37 AT1G08610 578 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10008998 pacid=23173333 polypeptide=Lus10008998 locus=Lus10008998.g ID=Lus10008998.BGIv1.0 annot-version=v1.0 ATGCTCTCAATCAAGCAATCTCAGAGCTTGCTTCGATCTCATCTCAAATCTTATTGCATCTCTTCGTTCTCTCATGGCAGGGTTTCCAGCTCGACTCACC ACCAACTTCATCATCCCTGCTTGTTCTTCGTCTATTTCACCTCTGTATCCTACCACTCGGCGTCGTCGGCGGCGGCGGTAGCTGCCCCCGGTTTTTTCGG TTCCACCGCCATCAGTGCTACAGAGGTAGCATCCACCTTCAAGGAATGGTTCAAGAGCGGAAACGATGCCGTTCTGGATCGGGTTTTCCAGATTCTCAGA GGGCAAGGTAAGGAGGACGAAGCAGCTCTGTTTTTTTCCCACTTGGGTCTTCGATTGTCGGAGTCGGTAGTTATAAAAGTGCTCGATTACGGCAGGTCGA AGTACGACGTCTTGTCGTGTATCAAGTTCTTCGACTGGGCTGGTCATCAGCATGGCTTCCATCACACTCGTGCAACTTACCATTCCCTTTTCAAGATCCT ATCCAAGTCCAGGAACATGTCCACCATGTTCGATTTCCTCGGCGTTTACAGCAGGGACAAGCTGTTCCTAAAGCAGACTGCTTTCCAGTCGATTCTGGTG ATGGGGTATGCTGTAGCGGGTAAGCCCCGCATTGCACTCCAAGTGTTTGGTAAAATGCGTTTTCAAGGACTGGACTTGGATGCATTTACGTACCACCTTC TTCTCAATTCGTTAGTTGAGGAGGGCGAGAGTTTTGATGCTGTTGATGCCATTGCCGAGCAGATTTCGGCCAGGGGGTTTGAAAGAGATGTCACACATAC GATAGTGGTGAAGAGCTTGTGCAGGCAGAACATGCTTGATGATGCTGAAGCTTACTTGCGGGAGATGCTTCTGGTTGATGATGGGCATGCTGTGAGTGTT CTTGTGGATGCCCTTTGCAGAGTAGGTCGGTTTGACAAGGCAGGGAAGTTGCTAGAGGAGTTCAAGGAGCTTGGCGTTAGGCCAATGGAGCCGGCGTATG GTGTTTGGCTTAAAGACCTTGTCCATGCTGGTAAGGTCGATGGAGCTCTCGAGTTCTTGCAGAGTAAGAAGTCATTGGAAGGATATGTTCCTGAGATTTT TCGGTATAACTATCTGTTGGATAGGCTGTTGAAGGAGAACCGACTTGGGGATGCTTATGATTTGCTTAAGGAAATGAGGGAAAGTGGGATTACACCGGAT AGGTGTACTATGAACGCTGTATTATGCTTCTTCTGCAAAGCCGGAATGGTTAGTGTTGCTCTTGAATTGTATAACTCCAGGTCAGATCTTGCATTTTCGC CCAATACCATGGCTTATAACTATCTTATCAATTCCCTGTGCGGGGATGGCAGTGTGGATGATGCATATCATGTACTAAAGAATTGGACACAGCAGCATGG TTCTGCTCCTCCTGGGAGGCAAACGTTTTATATACTTGCCGACACTTTATCTAGGGAAGGTAAACTTGATAAAATGAAAGACCTCGTTCTCATGGCTTTG GAACGGAATTTTACACCAAGTATATGTGAGAAGTTTATATCAGCTATGTGTCGGGCTGAGAGGGTGGAAGATGGTTATTTGATACACGGGGAACTTAACA GGATGAACAAAATCGTTAGGGAAAGTACATACTCAAAGTTAATTCGTGGGTTTAGTAGATCGGATAGACCAGATATTGCAGCAGGGCTTCTGATTGAAAT GCAAGAGAAGGGGCATAGACCCAATAAGAATCTATTTAAAAGTGTCATTTGCTGTTTATGCTATTCGGAGAATGCAGATGAACAAGTCCTGAAGCTGCTC GAAATGCAGTTATCTCTTCATGAACATAACTGTCGTATTTATAACATATTCATTGATGGAGTAGGGACTGGGAAGAGGCCTGACCTAGCCAGGAAAGTAT TTGAGATGATGCTGGGAAATGGGATTGAGCCTAATCTTGAATGTGACACTCGTTTGCTGAGGAGCTATCTACGGAATGATAGGGTAGCTGATGCTGTAGA GTTCTTTGATGCTTTAGATCAAAGAAGAAAGGTTAGGAAGAGGTTGTACTGCACCATGGTTATTAATCTGGCTAAGTTGGATCAAATGAATCTTGCATTG AATTATATGAATGAAATGCGGAAATCCAATGAACTGCAGCCTAGTGGAATAACTCCTAGCATTGAATGCTATGAGGTTCTTATCCAGAAGCTCTCTGAGT TTGGAATGTATGACTTGGCAGTGAAACTCATATATGACTTCGAAAAACTAGGACGTCGTGTCACTTCTTTCATGGGTAATGTGTTTTTGTACCATTCCCT GAAGGGTAGAGAGCTCCATCAGGCTTGGGATAGATTTAGATTGATGGAGGTGCAAGATGAGAGTGAGGCATCAAAGAAGCTTTCATTATTTTGCCACCTG GTTGGTGCATTCTCTGGCTGTGTTAGCGTTAGCGAGGAAATTGATGACTTGGAAGAATTGATTGCACAATGCTTCCCCTTAAATATTTACACTTTTAATC TGTTATTGAAAAGGCTATGCATGCTGGATATGGAGAAAGGCTGCGAGTTCTTTGCTAAGGTGCTCCGGGGAGGCTATGAACCCAATCGATGGACTTATGA CATCATGGTGCATGGTTTTCTTAGGCAAGGAAAGACGCAGGAAGCTAGAATGTGGATGGCAGAGATGTTTCAACAAGGGTTTGATCTGACTGAGAGTACC TCCAGATACGTAACAAGAATGGACGCCAAAACATTTATAGCTGAAAACAATAATAACCAGGCAACGGTCAGAGGTTGA
AA sequence Show only first row Show all	>Lus10008998 pacid=23173333 polypeptide=Lus10008998 locus=Lus10008998.g ID=Lus10008998.BGIv1.0 annot-version=v1.0 MLSIKQSQSLLRSHLKSYCISSFSHGRVSSSTHHQLHHPCLFFVYFTSVSYHSASSAAAVAAPGFFGSTAISATEVASTFKEWFKSGNDAVLDRVFQILR GQGKEDEAALFFSHLGLRLSESVVIKVLDYGRSKYDVLSCIKFFDWAGHQHGFHHTRATYHSLFKILSKSRNMSTMFDFLGVYSRDKLFLKQTAFQSILV MGYAVAGKPRIALQVFGKMRFQGLDLDAFTYHLLLNSLVEEGESFDAVDAIAEQISARGFERDVTHTIVVKSLCRQNMLDDAEAYLREMLLVDDGHAVSV LVDALCRVGRFDKAGKLLEEFKELGVRPMEPAYGVWLKDLVHAGKVDGALEFLQSKKSLEGYVPEIFRYNYLLDRLLKENRLGDAYDLLKEMRESGITPD RCTMNAVLCFFCKAGMVSVALELYNSRSDLAFSPNTMAYNYLINSLCGDGSVDDAYHVLKNWTQQHGSAPPGRQTFYILADTLSREGKLDKMKDLVLMAL ERNFTPSICEKFISAMCRAERVEDGYLIHGELNRMNKIVRESTYSKLIRGFSRSDRPDIAAGLLIEMQEKGHRPNKNLFKSVICCLCYSENADEQVLKLL EMQLSLHEHNCRIYNIFIDGVGTGKRPDLARKVFEMMLGNGIEPNLECDTRLLRSYLRNDRVADAVEFFDALDQRRKVRKRLYCTMVINLAKLDQMNLAL NYMNEMRKSNELQPSGITPSIECYEVLIQKLSEFGMYDLAVKLIYDFEKLGRRVTSFMGNVFLYHSLKGRELHQAWDRFRLMEVQDESEASKKLSLFCHL VGAFSGCVSVSEEIDDLEELIAQCFPLNIYTFNLLLKRLCMLDMEKGCEFFAKVLRGGYEPNRWTYDIMVHGFLRQGKTQEARMWMAEMFQQGFDLTEST SRYVTRMDAKTFIAENNNNQATVRG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71210			Pentatricopeptide repeat (PPR)...		Lus10008998 [exp]	0	1
AT5G56730			Insulinase (Peptidase family M...		Lus10012918 [exp]	2.0	0.8612
AT4G09680		ATCTC1	conserved telomere maintenance...		Lus10032880 [exp]	4.5	0.8234
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024063 [exp]	5.7	0.8261
					Lus10021411 [exp]	6.6	0.8362
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	6.9	0.8343
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Lus10014023 [exp]	9.4	0.7459
AT5G15010			Tetratricopeptide repeat (TPR)...		Lus10021991 [exp]	12.0	0.7999
AT5G24680			Peptidase C78, ubiquitin fold ...		Lus10032907 [exp]	13.1	0.7469
AT1G55750			BSD domain (BTF2-like transcri...		Lus10007089 [exp]	16.0	0.8078
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10005007 [exp]	17.1	0.8108

Compare expression of checked genes

Lus10008998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.