Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02475 251 / 3e-85 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT4G01883 215 / 7e-71 Polyketide cyclase / dehydrase and lipid transport protein (.1) AT1G02470 204 / 2e-66 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009629 [exp] 344 / 3e-121 AT1G02475 237 / 4e-79 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G190300 [exp] 265 / 1e-90 AT1G02475 241 / 6e-81 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.014G115400 [exp] 265 / 1e-90 AT1G02475 217 / 1e-71 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF03364 [flax] [poplar] Polyketide_cyc Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Lus10009002 pacid=23173330 polypeptide=Lus10009002 locus=Lus10009002.g ID=Lus10009002.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCCTTAATCTCAAGCTGCTCAACCCCATATCCAACCCTCAATCTAATCCACCCTTCTCTCAACTCAATCGCCGCTTGCAGCACCTCAACCA CAACGACGATAAAGCCTCCTCCGACCTTCAGCTGGGTTCATCACCAAAGAAGCTCGCCGTCGTCTCGGCGTTCGAAGTTGTTCTTCAAACCATACTCTCC TCCAGTCATGCAGTGGCAGGATTGCACAGTGAAGAAGGAGATTGATGTGCCGGTTTCCGTTGCTTACAACTGCTATTTGGATCGTGAATCGATTCCGAAA TGGATGCCCTTTATCTCCTCTGTCCAGATACTTGAAGACAAGCCAGACTTATCACGGTGGTCGTTGAAATACGAAGCGTTCGGTCAAGATATCGAATTCT CATGGCTAGCTCGAAATATGCAGCCTACTCCAAACCAGAAGATTCATTGGAGATCTCTAGATGGCCTTCCCAACAGGGGTGCTGTTCGATTCTTCCCGAA AGGGGCGACCTCCTGTACAGTAGAACTGACAGTATCATACGAGGTTCCTCCCATTTTGAGTCCAGTTGCATCAGCACTGCAACCATTCCTTGAGAATCTG CTCAGCCGCGGACTGGACAGATTCGCAACGTTCGCCAAAAGCTACTGA
AA sequence Show only first row Show all	>Lus10009002 pacid=23173330 polypeptide=Lus10009002 locus=Lus10009002.g ID=Lus10009002.BGIv1.0 annot-version=v1.0 MAAALISSCSTPYPTLNLIHPSLNSIAACSTSTTTTIKPPPTFSWVHHQRSSPSSRRSKLFFKPYSPPVMQWQDCTVKKEIDVPVSVAYNCYLDRESIPK WMPFISSVQILEDKPDLSRWSLKYEAFGQDIEFSWLARNMQPTPNQKIHWRSLDGLPNRGAVRFFPKGATSCTVELTVSYEVPPILSPVASALQPFLENL LSRGLDRFATFAKSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02475			Polyketide cyclase/dehydrase a...		Lus10009002 [exp]	0	1
AT1G19660			Wound-responsive family protei...		Lus10007390 [exp]	10.4	0.6930
AT5G41650			Lactoylglutathione lyase / gly...		Lus10024719 [exp]	14.8	0.6540
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Lus10022769 [exp]	17.0	0.6556
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10016017 [exp]	26.5	0.6377
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10014128 [exp]	27.6	0.6595
AT2G36895			unknown protein		Lus10001393 [exp]	33.9	0.6432
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040924 [exp]	36.9	0.6650
					Lus10026124 [exp]	40.6	0.6542
AT1G32920			unknown protein		Lus10001526 [exp]	40.9	0.6566
AT2G43950		OEP37, ATOEP37	ARABIDOPSIS CHLOROPLAST OUTER ...		Lus10013621 [exp]	46.3	0.6214

Compare expression of checked genes

Lus10009002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.