Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48780 59 / 7e-10 unknown protein AT3G18300 42 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009633 [exp] 354 / 4e-123 AT1G48780 93 / 5e-22 unknown protein Lus10041430 [exp] 45 / 4e-05 AT1G68330 111 / 4e-29 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G045700 [exp] 95 / 8e-23 AT1G48780 107 / 8e-28 unknown protein Potri.012G055300 [exp] 90 / 5e-21 AT1G48780 105 / 2e-27 unknown protein Potri.017G115700 [exp] 75 / 2e-15 AT1G67050 112 / 6e-30 unknown protein Potri.008G122300 [exp] 75 / 2e-15 AT1G68330 134 / 6e-38 unknown protein Potri.010G122800 [exp] 64 / 8e-12 AT1G68330 136 / 7e-39 unknown protein Potri.004G098700 [exp] 59 / 4e-10 AT1G67050 117 / 6e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009004 pacid=23173351 polypeptide=Lus10009004 locus=Lus10009004.g ID=Lus10009004.BGIv1.0 annot-version=v1.0 ATGTGTACAGAGACAGAGCCACGTTTCTCCTTCTCCAGAGATCTCTCCGGTGACGGCGATGAATCCCATCCGCCGGCGGCGGATTCCGAGCAGCATCAGT GCAGAAGAGACGCAGACCTCCTCAGTTATTGTTCTCCCACCGCCGATTCTCACACCACCTCCGATCATCCGTTCGAATTCAGGGTAGATTCGAGAAATGG CCACTACCCCTCCTCCTCCGCCGACGAGCTCTTCGCCGGCGGTATCATCCTCCCCTTCCACCTCCTCCATCGTGACACGGTCATCTCATCCTCCTTCTCC CCCTCCTCCGCTTTTATCTCTGCCGCTCACAGACGAGCACAAAGCTTCGACCAGCTCAACCTCCTCCCTCTGCCACCACCGGCACATCAAAAGAAACCCC CGACGATTTCAGCTGCTACTCCTCCCCATGAAACCGCCGAGGATCAACCGATGAAGCCGCCTACCAAGTCATTTTGGGGATTCAAGAGAAGCACAAGTCT GAGTAACTGCGACCTGAAAAAAACCCTAATCTCCTCCCTCCCACCACTTCTCTCTCGGAGCAAATCCACTGGATCGGTCCCAATTCCCAAAAAAGCGTCA CATAAAAATGAAATCCACCATCAACGCAAGCCGATCCCCCACAATCACTTGGGGAAATCATCATCGTCTTCGTCGTCTAATTATGCGTATTCGGTCCCCC AAAAGCCGCCCCTGAAGAAGAACTCCTATGGCGGCAGTGGAGGAGGAGGATTCTCTTCTTCCACTTATGGACATAATCAGTATGCGAACGGGGCGGTGAG GATTAGTCCGGTGCTGAACGTTCCGACGATCTCGAGAGGGACGGCGAATTTTTTCGGGTTGGGTTCGATCTTGACCGGAAAAGAGAAGAAGAGCAGAAAG TGA
AA sequence Show only first row Show all	>Lus10009004 pacid=23173351 polypeptide=Lus10009004 locus=Lus10009004.g ID=Lus10009004.BGIv1.0 annot-version=v1.0 MCTETEPRFSFSRDLSGDGDESHPPAADSEQHQCRRDADLLSYCSPTADSHTTSDHPFEFRVDSRNGHYPSSSADELFAGGIILPFHLLHRDTVISSSFS PSSAFISAAHRRAQSFDQLNLLPLPPPAHQKKPPTISAATPPHETAEDQPMKPPTKSFWGFKRSTSLSNCDLKKTLISSLPPLLSRSKSTGSVPIPKKAS HKNEIHHQRKPIPHNHLGKSSSSSSSNYAYSVPQKPPLKKNSYGGSGGGGFSSSTYGHNQYANGAVRISPVLNVPTISRGTANFFGLGSILTGKEKKSRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48780			unknown protein		Lus10009004 [exp]	0	1
AT1G72300			Leucine-rich receptor-like pro...		Lus10016395 [exp]	3.2	0.9027
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10040416 [exp]	6.6	0.9230
AT3G27880			Protein of unknown function (D...		Lus10032145 [exp]	8.0	0.8964
AT5G12300			Calcium-dependent lipid-bindin...		Lus10009693 [exp]	10.1	0.9003
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10025754 [exp]	12.2	0.9129
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10039404 [exp]	13.7	0.8796
AT4G28300			Protein of unknown function (D...		Lus10033692 [exp]	13.9	0.8396
AT1G72220			RING/U-box superfamily protein...		Lus10015901 [exp]	15.2	0.9091
AT4G29850			Eukaryotic protein of unknown ...		Lus10039596 [exp]	15.2	0.8424
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10014104 [exp]	24.7	0.9053

Compare expression of checked genes

Lus10009004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.