Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48790 576 / 0 AMSH1 associated molecule with the SH3 domain of STAM 1 (.1) AT4G16144 422 / 1e-142 AMSH3 associated molecule with the SH3 domain of STAM 3 (.1) AT1G10600 234 / 9e-74 AMSH2 associated molecule with the SH3 domain of STAM 2 (.1.2.3) AT5G23540 47 / 2e-05 Mov34/MPN/PAD-1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009634 [exp] 1031 / 0 AT1G48790 536 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Lus10036454 [exp] 424 / 3e-143 AT4G16144 645 / 0.0 associated molecule with the SH3 domain of STAM 3 (.1) Lus10030875 [exp] 241 / 5e-76 AT1G10600 311 / 2e-108 associated molecule with the SH3 domain of STAM 2 (.1.2.3) Lus10030613 [exp] 201 / 1e-60 AT1G10600 253 / 5e-85 associated molecule with the SH3 domain of STAM 2 (.1.2.3) Lus10031085 [exp] 49 / 4e-06 AT5G23540 599 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10035470 [exp] 49 / 6e-06 AT5G23540 601 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10021746 [exp] 48 / 1e-05 AT5G23540 618 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10042663 [exp] 48 / 2e-05 AT5G23540 616 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G045800 [exp] 627 / 0 AT1G48790 581 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Potri.010G141100 [exp] 444 / 2e-151 AT4G16144 697 / 0.0 associated molecule with the SH3 domain of STAM 3 (.1) Potri.010G041200 [exp] 198 / 4e-60 AT1G10600 256 / 3e-87 associated molecule with the SH3 domain of STAM 2 (.1.2.3) Potri.014G032900 [exp] 48 / 1e-05 AT5G23540 563 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.002G127900 [exp] 48 / 1e-05 AT5G23540 567 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF01398 [flax] [poplar] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Lus10009006 pacid=23173366 polypeptide=Lus10009006 locus=Lus10009006.g ID=Lus10009006.BGIv1.0 annot-version=v1.0 ATGAGGCCAGCTCATTCGTCTTCAGACAGGATCAATGTTGCTGCCAGTGCCCGAAGACTGGATGTCGACCATCGGATTTCCCTCCGGTTCTATTACCGGA TCGCCGATAATATTCTTCGCCAGGCTTACATCTTTCGAGAAGAGAAGAACATAATCGATCTTTACATCATGCTTCTGAGGTTCTCAAGCTTGGTTTCAGA AACAATACCATGTCATCGAGAGTTCAGGTCATCTTCTCAGACTAAAAAACTCTCTTTGAAAAAGCAACTATTGGGTGCGGTGCAAGAGCTTGAGAAACTG AAGCCAGCAGTACAACAGAAGATCAATGAGTTGAACCATAACCACACTTATCAAGTAAATGGCCAGTCACGTAATATTCAAAGCAATGCATCGCAGTGGC CTTCTGCTCCAACAAAACCTATCACAAGCTATGATTTTACTAAGGCAATAAGACCCATTTCTCAGGCATCTAGTTTGCAACGTCCCAGCATTCTGCCAGG TTCACTTGCTAGGCCAGTGGCCGAACAGTTTGGCAAAATGTCCTTAAGCTTCCCACGCCCGAAGGATGAGACTCTTTCAAAACATTCTATATTTGGTCCA AATGGATTATATGGAAACTGGCAGCCACCTTCAACTGATAAAAGAGTCCAATATCCCAGCAACATAGACCTGACACCTGTTGAAATTCCAAGCTTACAGG AGTCGATGACTAATGGACTTCTAGTGAAAAAGGATTCTAATGACTCAAGAATTGGCATCTTGGAACAGTCACTAGGAAATGGATTCCCACAAGAATCAGA TTCGAGAATTTCAGAGCCTCAAAGTTCAACTGCAGAATCAGTACTTACTGCAGGTGAAGTAAATCAGAGCTGTCAAACAGAAGAACCGAACCCCATGATT TCCTTTGAGACCCAAGATGCCCCAGTTCATACAGATATTGTTAGACAGCCTTCTCCACCAGCAGTACTGGCAGAAGTACAAGATTTGATCCCAGTAACGT CTCCTCAAGTTACTGAGCCAGAATGTAAGATGGACATTTCCTCACCAGATGTTCATAAGGATCCCTTACAACTGCACATTTCAACCACGATGATGGAAAG TTTCATGAAGCTGGCCAAGAAAAACACTGATAACAATTTGGAAACTTGCGGTATCCTTGCTGGCTCTCTTAAAAACAGGAAGTTCTACATTACAGCCCTC ATCATACCGAAGCAGGAATCTACATCAGCCTCTTGTCAGGCTACAAATGAAGAGGAAATTTTCGAAGTGCAGGATAAGCGGTCTCTTTTCCCACTTGGCT GGATTCATACACATCCTACACAGTCCTGTTTCATGTCATCCATCGATGTCCACACCCATTATTCATATCAGATTATGTTGCCTGAATCTGTAGCCATCGT CATGGCACCACGAGATTCTTCGAGGCAAGTATTGTCATCCTCTAAAGCTACCTCAATTTTTTCAATGCGAGAGAACTTTTCATCTCAGCCTGTTTTTTGG TTCTTCCTCCCCGATTGCAGGAAACATGGAATCTTCCGGCTGACTACACCGGGAGGCATGTCGGTGATAAGGCAGTGCCAGCAACGAGGGTTCCATCCCC ACGATCCGCCTCCAAATGGCGGACCAATCTACGATACATGTACAGACGTGTATATGAACCCTACCCTCAAGTTTGATGTTATCGATCTCCGGTGA
AA sequence Show only first row Show all	>Lus10009006 pacid=23173366 polypeptide=Lus10009006 locus=Lus10009006.g ID=Lus10009006.BGIv1.0 annot-version=v1.0 MRPAHSSSDRINVAASARRLDVDHRISLRFYYRIADNILRQAYIFREEKNIIDLYIMLLRFSSLVSETIPCHREFRSSSQTKKLSLKKQLLGAVQELEKL KPAVQQKINELNHNHTYQVNGQSRNIQSNASQWPSAPTKPITSYDFTKAIRPISQASSLQRPSILPGSLARPVAEQFGKMSLSFPRPKDETLSKHSIFGP NGLYGNWQPPSTDKRVQYPSNIDLTPVEIPSLQESMTNGLLVKKDSNDSRIGILEQSLGNGFPQESDSRISEPQSSTAESVLTAGEVNQSCQTEEPNPMI SFETQDAPVHTDIVRQPSPPAVLAEVQDLIPVTSPQVTEPECKMDISSPDVHKDPLQLHISTTMMESFMKLAKKNTDNNLETCGILAGSLKNRKFYITAL IIPKQESTSASCQATNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPRDSSRQVLSSSKATSIFSMRENFSSQPVFW FFLPDCRKHGIFRLTTPGGMSVIRQCQQRGFHPHDPPPNGGPIYDTCTDVYMNPTLKFDVIDLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48790		AMSH1	associated molecule with the S...		Lus10009006 [exp]	0	1
AT1G48790		AMSH1	associated molecule with the S...		Lus10009634 [exp]	1.0	0.9673
AT2G30880			Pleckstrin homology (PH) domai...		Lus10020739 [exp]	1.4	0.9628
AT4G28260			unknown protein		Lus10018587 [exp]	3.3	0.9409
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10012990 [exp]	4.0	0.9529
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10023989 [exp]	5.3	0.9374
AT1G05840			Eukaryotic aspartyl protease f...		Lus10021485 [exp]	5.3	0.9463
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10041216 [exp]	5.5	0.9348
AT5G66930			unknown protein		Lus10019643 [exp]	5.9	0.9509
AT1G15740			Leucine-rich repeat family pro...		Lus10008036 [exp]	6.0	0.9546
AT2G22730			Major facilitator superfamily ...		Lus10003528 [exp]	8.0	0.9339

Compare expression of checked genes

Lus10009006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.